PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G12010.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 364aa MW: 39919.3 Da PI: 6.9956

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G12010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.3	1e-51	10	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+ ONIVA02G12010.1 10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQEEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKA 102 69**************************.9***********943444442456******************************* PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g+ +gl+ktLvfy+grap+g+ktdW+mheyrl ONIVA02G12010.1 103 IFLGggGGTRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 141 8777888**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-58	8	161	IPR003441	NAC domain
PROSITE profile	PS51005	58.396	10	161	IPR003441	NAC domain
Pfam	PF02365	1.3E-27	11	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MHPNGAPLAV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQEEWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KAIFLGGGGG TRIGLRKTLV 120 FYTGRAPHGK KTDWIMHEYR LDDDNVDVPE EGWVVCRVFK KKSIHQRGFD QPDMAAAADE 180 DELRYQLLHG VGMSSSPVDQ KHVLLQEQLV AHGAHGGGFV VPAFDASMHL PQLASADAAP 240 CGGGGGGGHV AFASMNPLDA AGCGSQNMMT MKMAATSGGE MLLMRSGGVD GGRFGAAADW 300 SILDKLLASH QNLDQLFHGK VAGAHQQQQQ QQQQMAMDAA SSLQRLPFHH YLGLEAADLL 360 KFSM

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MHPNGAPLAV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQEEWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KAIFLGGGGG TRIGLRKTLV  120
FYTGRAPHGK KTDWIMHEYR LDDDNVDVPE EGWVVCRVFK KKSIHQRGFD QPDMAAAADE  180
DELRYQLLHG VGMSSSPVDQ KHVLLQEQLV AHGAHGGGFV VPAFDASMHL PQLASADAAP  240
CGGGGGGGHV AFASMNPLDA AGCGSQNMMT MKMAATSGGE MLLMRSGGVD GGRFGAAADW  300
SILDKLLASH QNLDQLFHGK VAGAHQQQQQ QQQQMAMDAA SSLQRLPFHH YLGLEAADLL  360
KFSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-50	8	167	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-50	8	167	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-50	8	167	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-50	8	167	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-50	8	167	18	174	NAC domain-containing protein 19
3swm_B	1e-50	8	167	18	174	NAC domain-containing protein 19
3swm_C	1e-50	8	167	18	174	NAC domain-containing protein 19
3swm_D	1e-50	8	167	18	174	NAC domain-containing protein 19
3swp_A	1e-50	8	167	18	174	NAC domain-containing protein 19
3swp_B	1e-50	8	167	18	174	NAC domain-containing protein 19
3swp_C	1e-50	8	167	18	174	NAC domain-containing protein 19
3swp_D	1e-50	8	167	18	174	NAC domain-containing protein 19
4dul_A	2e-50	8	167	15	171	NAC domain-containing protein 19
4dul_B	2e-50	8	167	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063943	0.0	AK063943.1 Oryza sativa Japonica Group cDNA clone:001-123-E07, full insert sequence.
GenBank	AK101280	0.0	AK101280.1 Oryza sativa Japonica Group cDNA clone:J033033C18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624882.1	0.0	NAC domain-containing protein 76-like
Refseq	XP_025878787.1	0.0	NAC domain-containing protein 76-like
Swissprot	Q5Z6B6	1e-108	NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBL	A0A0E0G4E9	0.0	A0A0E0G4E9_ORYNI; Uncharacterized protein
STRING	ONIVA02G12010.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3461	37	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	3e-87	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]