PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA02G10570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 188aa MW: 19304.5 Da PI: 9.7918 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.7 | 7.3e-07 | 19 | 71 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkas..kapskKlsKaeiLekAveYIksLq 55 + Er RR+++N+ ++ L +l+ +a+ ++ + + + L A eYI++ q ONIVA02G10570.1 19 RKTTERIRREQMNKLYSDLDSLVGSAPptGGAAAATTRPDRLGVAAEYIRQKQ 71 6789*********************555666666699999*********9866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.2E-6 | 16 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-8 | 17 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MDIPPPSAGG GGGGGKTDRK TTERIRREQM NKLYSDLDSL VGSAPPTGGA AAATTRPDRL 60 GVAAEYIRQK QERVDMLREK KRELTGGGGG GSSSSSGAGA ATAAAPEVEV QHLGSGLHAI 120 LFTGAPPTDG ASFHRAIRAV EDAGGQVQNA HFSVAGAKAV YTIHAMIGDG YGGIERVVQR 180 LKEAIRSN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005756 | 0.0 | AP005756.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688523.1 | 1e-71 | PREDICTED: uncharacterized protein LOC107303503 | ||||
TrEMBL | A0A0E0G3V9 | 1e-131 | A0A0E0G3V9_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA02G10570.1 | 1e-132 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11987 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-15 | bHLH family protein |