PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G09840.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 252aa    MW: 28248.6 Da    PI: 4.9419
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G09840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.74.6e-36121431128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      +ppGfrF+Ptde+lvv+yL+++++++++ +   i+++d+y+v+Pw+Lp +++++++++ yfF+ +++++    +++r+t sg+Wk t ++k+++
  ONIVA02G09840.1  12 MPPGFRFQPTDEQLVVDYLQRRTAAQPCVT-PDITDIDVYNVDPWQLPaMAMYGSDHDRYFFTMAAREA----QARRTTPSGFWKPTSTKKTIF 100
                      79*************************988.55***************778888999*******99875....7899****************9 PP

              NAM  94 sk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                      +    ++  + +k+ +vfy      +g++ + +kt+W+mheyrl
  ONIVA02G09840.1 101 VVaggHEVPTAVKRRFVFYlghhqpSGSN-NNNKTSWIMHEYRL 143
                      9976666669*********6554433333.346*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-414177IPR003441NAC domain
PROSITE profilePS5100540.78812177IPR003441NAC domain
PfamPF023652.9E-2213143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAMTPQLAFS RMPPGFRFQP TDEQLVVDYL QRRTAAQPCV TPDITDIDVY NVDPWQLPAM  60
AMYGSDHDRY FFTMAAREAQ ARRTTPSGFW KPTSTKKTIF VVAGGHEVPT AVKRRFVFYL  120
GHHQPSGSNN NNKTSWIMHE YRLMNSPRAA VPSSSSVNRL PTDDLTEEMV LCRISNKDLP  180
KPPFIHNGLL QFSSVGLNGD GYNYLILDHL EPPAMEYPNV DIGNVDDAAA ADDDPGDLDE  240
EIDDSMQRNH GG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-271217717165NO APICAL MERISTEM PROTEIN
1ut4_B1e-271217717165NO APICAL MERISTEM PROTEIN
1ut7_A1e-271217717165NO APICAL MERISTEM PROTEIN
1ut7_B1e-271217717165NO APICAL MERISTEM PROTEIN
3swm_A2e-271217720168NAC domain-containing protein 19
3swm_B2e-271217720168NAC domain-containing protein 19
3swm_C2e-271217720168NAC domain-containing protein 19
3swm_D2e-271217720168NAC domain-containing protein 19
3swp_A2e-271217720168NAC domain-containing protein 19
3swp_B2e-271217720168NAC domain-containing protein 19
3swp_C2e-271217720168NAC domain-containing protein 19
3swp_D2e-271217720168NAC domain-containing protein 19
4dul_A1e-271217717165NAC domain-containing protein 19
4dul_B1e-271217717165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072830.0AK107283.1 Oryza sativa Japonica Group cDNA clone:002-126-B03, full insert sequence.
GenBankEF1224790.0EF122479.1 Oryza sativa (japonica cultivar-group) clone KCS348H05 NAC6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625739.10.0NAC domain-containing protein 48-like
TrEMBLA0A0E0G3L40.0A0A0E0G3L4_ORYNI; Uncharacterized protein
STRINGONIVA02G09840.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165401213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.13e-33NAC family protein