PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G05120.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 285aa    MW: 30610.6 Da    PI: 6.7381
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G05120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.12e-222973145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     k ienk  rqv fskRr+g++KKA+ELSvLC+a+vav+ fs+ g+
  ONIVA02G05120.1 29 KLIENKEARQVCFSKRREGVFKKASELSVLCGARVAVVFFSPAGR 73
                     569***************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-282180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.8382181IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-262290IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-172343IPR002100Transcription factor, MADS-box
CDDcd002653.37E-302690No hitNo description
PfamPF003191.7E-243177IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-174358IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-175879IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAKAAAEMDV GGGEGRRKRT RGRQRIEMKL IENKEARQVC FSKRREGVFK KASELSVLCG  60
ARVAVVFFSP AGRPHCFGHP SVPAVADRFL LGRSPTVAAA AAAEEEEAVV REFNRVEERL  120
KDALGAAARR RDALDEAARV AGVWNDADVR RAGLADLVSM LAALQRVQAE ASERVHDIIV  180
EEAMTHYTGA AAAAANLIDY LDAGPFVSHS PGSHDTTTKL IGGNAVHAPP LSFPPMIMPP  240
PLPPQFSHEF GYTDLAAGYG YNLDHGHGAA CETQEIHNAA ACDFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040930.0AP004093.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1661_C12.
GenBankAP0048630.0AP004863.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0023I17.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878655.11e-173agamous-like MADS-box protein AGL28
TrEMBLA0A0E0G1S20.0A0A0E0G1S2_ORYNI; Uncharacterized protein
STRINGONIVA02G05120.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-20AGAMOUS-like 29