PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G02790.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 753aa    MW: 80006.1 Da    PI: 6.7287
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G02790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.21.6e-28486537152
           RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      aek+++le+l+k+Fs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki+++
  ONIVA02G02790.1 486 AEKSVTLEELQKHFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKV 537
                      5899*********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.598471557IPR003035RWP-RK domain
PfamPF020422.8E-26489537IPR003035RWP-RK domain
SuperFamilySSF542776.54E-18611683No hitNo description
PROSITE profilePS5174515.378616691IPR000270PB1 domain
SMARTSM006663.5E-16616712IPR000270PB1 domain
CDDcd064073.01E-34617699No hitNo description
PfamPF005641.5E-11617689IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.5E-21617683No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MERVVGDFNL LLQRGGAAGE RGSEGGGGGS PGTEEAAAVA VKQRIARALR LYKEAAGDGG  60
GGWMVQVWAP ARDGARRVLA TRGQPFVLAS QCHRLFQYRT VSLTRVFPVG GAAAADEQGL  120
PARAFDATAP EWTPNVQCYG SGEYARISYA LIYDIQGSLA LPILDPDDAS SPLAVFELVT  180
TAPLLRVSGE VANLCNALRA VSLRGAGICN RAAECYSLAV NQIVHRDATR AAMAEVSELL  240
ITVCEAHKLP LAQTWVRCRS CGGGGEDTEK AALTTAGAPF HLAAGADARG FRDACVEHHL  300
QRGQGLVGTA ARAPGGGRLC ADVARCSKDD YPLAHYAGMY GLAGCLVLRA ELSAAAMADA  360
AAATAGDEED CVVLELFLPP DCTGVAEQKA AVDAVSATIK QCSGNLKAIV ISNLDDLFLD  420
TMADGDHQLR HEMDDLGDDQ RCSDEEDLQL LENTNIGELN IHNADQIRNE DPTSQVGKNK  480
TKRGKAEKSV TLEELQKHFS GSLKDAARSL GVCPTTMKRI CRQHGIPRWP FRKISKVNRS  540
LDKMKRVMES VNCSPSPPVA MPAHPALLLP PPPPPPRPCL SSTVGETSSH GSCQAPPSHA  600
KTALRKPPRC GNGDGVVTIK ASHRGDIIRF RVPCSASVAA VKAEVAKRLS LDAGAFDVKY  660
LDDDHQWVLL SCDADFQECL DVVPALPSMP VTGRSGSGAA APVVVRLMVQ EVADNIGKFP  720
QPKDPFLSLM VCNPVGVPVY QCSPWTSVYQ FRM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627710.10.0protein NLP3-like
TrEMBLA0A0E0G0T30.0A0A0E0G0T3_ORYNI; Uncharacterized protein
STRINGONIVA02G02790.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62692939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.11e-106Nin-like family protein