PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G02260.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BES1
Protein Properties Length: 716aa    MW: 80213 Da    PI: 7.2603
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G02260.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822170.87.4e-53572081142
           DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspes 92 
                      gg +++++++E+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r++s+pl   ++++ g ++ +s+e+
  ONIVA02G02260.2  57 GGEREREREREKERTKLRERHRRAITSRMLSGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRASSQPLhpPTPQSPGIFHVNSVET 150
                      4678899********************************************************************998999************* PP

           DUF822  93 slq.sslkssalaspvesysaspksssfpspssldsislasa.......asllpvlsv 142
                      ++  s+l+s+a+ +p++s+++++++++++spsslds+ +a++        ++ +v+s 
  ONIVA02G02260.2 151 PSFtSVLNSYAIGTPLDSQASMLQTDDSLSPSSLDSVVVADQsiknekyGNSDSVSSL 208
                      *99899*********************************9987766655444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.4E-4959211IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.806.9E-172229670IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514451.11E-173229709IPR017853Glycoside hydrolase superfamily
PfamPF013734.5E-81254619IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-50267281IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-50288306IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-50401423IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-50474493IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-50508524IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-50525536IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-50543566IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.5E-50581603IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MSLKHPHSPV LDGDPPPHRR PRGLVSTPPP PAVAADPSPS PSPAAPPPRR RGGGGGGGER  60
EREREREKER TKLRERHRRA ITSRMLSGLR QHGNFPLPAR ADMNDVLAAL ARAAGWTVHP  120
DGTTFRASSQ PLHPPTPQSP GIFHVNSVET PSFTSVLNSY AIGTPLDSQA SMLQTDDSLS  180
PSSLDSVVVA DQSIKNEKYG NSDSVSSLNC LENHQLTRAS AALAGDYTRT PYIPVYASLP  240
MGIINSHCQL IDPEGIRAEL MHLKSLNVDG VIVDCWWGIV EAWIPHKYEW SGYRDLFGII  300
KEFKLKVQVV LSFHGSGETG SGGVSLPKWV MEIAQENQDV FFTDREGRRN MECLSWGIDK  360
ERVLRGRTGI EAYFDFMRSF HMEFRNLTEE GLISAIEIGL GVSGELKYPS CPERMGWRYP  420
GIGEFQCYDR YMQKNLRQAA LSRGHLFWAR GPDNAGYYNS RPHETGFFCD GGDYDSYYGR  480
FFLNWYSGIL IDHVDQVLSL ATLAFDGVET VVKIPSIYWW YRTASHAAEL TAGFYNPTNR  540
DGYSPVFRML KKHSVILKFV CYGPEFTIQE NNEAFADPEG LTWQVMNAAW DHGLSISVES  600
ALPCLDGEMY SQILDTAKPR HDPDRHHVSF FAYRQLPSFL LQRDVCFSEL GNFVKCMHDG  660
SLIKIVVRVR IIIAHQSGSS ALDVLMQRLT VLCIRGVSTY PIKIIRSRYL TTVIAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12223265811442Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200490.0AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622759.10.0beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0E0G0K70.0A0A0E0G0K7_ORYNI; Beta-amylase
STRINGONIVA02G02260.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]