PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G02170.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 384aa    MW: 41062.8 Da    PI: 5.8652
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G02170.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.11.5e-21281343163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elk+++rkq+NRe+ArrsR+RK+ae+eeL  ++++L aeN++L+ ele++kke+++l s++
  ONIVA02G02170.2 281 ERELKKQKRKQSNRESARRSRLRKQAECEELSVRADNLRAENSSLRAELERIKKEYEALLSHN 343
                      89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.6E-2938133IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.4E-20160263No hitNo description
Gene3DG3DSA:1.20.5.1705.4E-15279340No hitNo description
SMARTSM003381.8E-18281345IPR004827Basic-leucine zipper domain
PfamPF001702.3E-19281343IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.794283346IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.94E-10284341No hitNo description
CDDcd147025.09E-25286336No hitNo description
PROSITE patternPS000360288303IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDQAHAPFVG PTRQSPTPTH AAHLCEFGCR EALLTNQMGT NDPGTPSKAT KASEPEQSPA  60
TTSGTTAPVY PEWPGFQAYS AIPPHGFFPP PVAASPQAHP YMWGAQPMVP PYGTPPPYMM  120
YPPGTVYAHP STPGVHPFNH YPMLANGNVE TAGTAPGASE INGKNELGRT SGPSANGITS  180
HSESGSESES EGSDANSQND SHSKENDVKE DGSSQNGISH TALNQNMSMA PTQTGVVIGG  240
VAPTTNLNIG MDYWGAAGSS PVPAVHGKAS SGSVRGEQWD ERELKKQKRK QSNRESARRS  300
RLRKQAECEE LSVRADNLRA ENSSLRAELE RIKKEYEALL SHNASLKEKL EGNSDSIPYM  360
NEQNDTNGTH QKQQDSDAQP NDAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297303RRSRLRK
2297304RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119010.0AK111901.1 Oryza sativa Japonica Group cDNA clone:J023076M20, full insert sequence.
GenBankAK1120090.0AK112009.1 Oryza sativa Japonica Group cDNA clone:006-209-B12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626323.10.0transcription factor HBP-1a
RefseqXP_015626324.10.0transcription factor HBP-1a
SwissprotP239221e-146HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBLA0A0E0G0J40.0A0A0E0G0J4_ORYNI; Uncharacterized protein
STRINGOS02T0128200-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.11e-58basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Tabata T,Nakayama T,Mikami K,Iwabuchi M
    HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
    EMBO J., 1991. 10(6): p. 1459-67
    [PMID:2026143]
  2. Tabata T, et al.
    A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif.
    Science, 1989. 245(4921): p. 965-7
    [PMID:2772648]
  3. Mikami K, et al.
    Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants.
    Mol. Gen. Genet., 1995. 248(5): p. 573-82
    [PMID:7476857]
  4. Nakayama T,Okanami M,Meshi T,Iwabuchi M
    Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain.
    Mol. Gen. Genet., 1997. 253(5): p. 553-61
    [PMID:9065688]
  5. Okanami M,Meshi T,Tamai H,Iwabuchi M
    HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain.
    Genes Cells, 1996. 1(1): p. 87-99
    [PMID:9078369]