PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA01G51790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 412aa MW: 45397.3 Da PI: 4.6885 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.8 | 3.5e-31 | 162 | 218 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+ver+ ++p+++++tYeg H h ONIVA01G51790.1 162 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERAVDEPDTLIVTYEGLHLH 218 8******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 27.164 | 156 | 221 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.5E-29 | 159 | 219 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-26 | 160 | 219 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-36 | 161 | 220 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-25 | 162 | 218 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 412 aa Download sequence Send to blast |
MEGAMQESRE YWRDGGDVVG EELLREILDE IAAVHSNSNS NFNSNSNSNS KEAEEEDERE 60 YFAAAAADEQ LQVEAPCGRR RRESMVNKLI STVYSGPTIS DIESALSFTA AGDHQLLADG 120 HNFAASSCSP VVFSPEKTLS KTMENKYTLK MKSCGNNGGL ADDGYKWRKY GQKSIKNSPN 180 PRSYYRCTNP RCNAKKQVER AVDEPDTLIV TYEGLHLHYT YSHFLHSTSS SSSSTTTQQQ 240 LQPQPQMMTN CKKKPKLHLH PLLHDDPPPP PPPPEMTTMM IMQSFSIQQQ QHDDDQLLQP 300 AADDHLMVQA PPDDCYNING SSSSGLMMSL DDDEQAAGAG GLLEDVVPLL VRRPPPPICN 360 NNNYYYSPAT TCTSDNEYGS SASASPSSSV SVSSWTTPMS PCIDMAILSN IF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-19 | 160 | 218 | 16 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-19 | 160 | 218 | 16 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK110625 | 0.0 | AK110625.1 Oryza sativa Japonica Group cDNA clone:002-169-B02, full insert sequence. | |||
GenBank | AY341842 | 0.0 | AY341842.1 Oryza sativa (japonica cultivar-group) WRKY1 mRNA, complete cds. | |||
GenBank | AY870605 | 0.0 | AY870605.1 Oryza sativa (japonica cultivar-group) WRKY17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641374.1 | 0.0 | probable WRKY transcription factor 49 | ||||
TrEMBL | A0A0E0FZJ0 | 0.0 | A0A0E0FZJ0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G51790.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7525 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43290.1 | 9e-41 | WRKY DNA-binding protein 49 |