PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G48650.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 421aa    MW: 44259.1 Da    PI: 6.3934
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G48650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11227269754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  ONIVA01G48650.1 227 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 269
                      79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764220269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16223286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9226269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-16227282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.99E-13227273No hitNo description
CDDcd048731.17E-4341401No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MASLLGLLFS SLLFSERCEA RRRARSGSEV AMDEAEAAAA AAKMDELAGG GGGGGGDWSY  60
LAADALAAAS FTAFPFHHHH HHHHRDVLSA STPSSLLLNM DAATAAAMFD FQAAFPSSSV  120
PPPPPTTTAA LPPFHDFASS NPFDDAPPPF LAPPGQKLGF LGPPGGAFGG GMGWDDDDEI  180
EQSVDASSMG VSASLENAAP VAAGGGGGGG GGGGRGKKKG MPAKNLMAER RRRKKLNDRL  240
YMLRSVVPKI SKMDRASILG DAIEYLKELL QRINDLHNEL ESAPSSSLTG PSSASFHPST  300
PTLQTFPGRV KEELCPTSFP SPSGQQATVE VRMREGHAVN IHMFCARRPG ILMSTLRALD  360
SLGLGIEQAV ISCFNGFAMD VFRAEQCRDG PGLGPEEIKT VLLHSAGLQN AMRTDEMRLA  420
I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216234KKKGMPAKNLMAERRRRKK
2228235ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1025940.0AK102594.1 Oryza sativa Japonica Group cDNA clone:J033098G23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651003.10.0transcription factor ICE1
TrEMBLA0A0E0FYA40.0A0A0E0FYA4_ORYNI; Uncharacterized protein
STRINGONIVA01G48650.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-93bHLH family protein