PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G46800.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 692aa    MW: 73837.3 Da    PI: 9.31
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G46800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09406453455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  ONIVA01G46800.1 406 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 453
                      79************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-16400471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.97E-10400457No hitNo description
PROSITE profilePS5088815.256402452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16404470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6406453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10408458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MTEILSPTKT ILLADCSSKK AHAFNPRKGG GCKDLQQQQQ QLVLLFHSFT VPPLFLALSR  60
TRKAPAFTLS PLAFPHPRRS GIWWLLASRV SFAGLGRSWE LGNSGGLVGF RGELRQIFEM  120
NCGPPDQLPP ATAPSCFLNL NWDQSMDAAA GGHLDPALSS MVSSPASNST GALHGISPQP  180
HYGGGTPLSS PPKLNLSMMG QFHHYAAPPQ VGGGGGGGGG LPILENLMPM GHLDQFLADP  240
GFAERAARLS GFDARGGGGG GGYGGAGPAQ FGLPDAGAAG ASKEMELGNT RDESSVSDPA  300
PGGAEIPPKG ASDGNARKRK ASGKGKGKDS PMSTSAAKED SSGKRCKSTE ESNAAAEENS  360
GKGKAAQSNS ENGGGKKQGK DSSSKPPEPP KDYIHVRARR GEATDSHSLA ERVRREKISQ  420
RMKLLQDLVP GCNKVVGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPQL DFNNLPNLLA  480
KDMHQSCSPL QSSHFPLETS GAPLPYINQP QQGNPLGCGL TNGMDNQGSM HPLDPAFCRP  540
MGSHHPFLNG VSDAASQVGA FWQDDLQSVV QMDMGQSQEI ATSSNSYNVL EGSENKLNFR  600
ICLSQKRVHM KIQDYLTASP ADFFSTISMG IDNVMRYKKE TALQQMRRSH GKKRGAKGET  660
GTVHIHSHKQ SIIKPCLRLL ADNFYSRRDI QS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1010630.0AK101063.1 Oryza sativa Japonica Group cDNA clone:J033022O19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621927.10.0transcription factor bHLH77 isoform X2
TrEMBLA0A0E0FXJ80.0A0A0E0FXJ8_ORYNI; Uncharacterized protein
STRINGONIVA01G46800.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-57bHLH family protein