PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G44840.2

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 269aa MW: 27621.9 Da PI: 8.0637

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G44840.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.8	7.6e-43	38	136	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+v++i+ lq++l+ql+++l ONIVA01G44840.2 38 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDL 131 7********************************************************************************************* PP DUF260 95 allke 99 a++k ONIVA01G44840.2 132 ARAKF 136 99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.332	37	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-42	38	134	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009799	Biological Process	specification of symmetry
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0048441	Biological Process	petal development
GO:0005654	Cellular Component	nucleoplasm

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MASSSASSVP APSGSVITIA SASASAAANT AACGTGSPCA ACKFLRRKCQ PDCVFAPYFP 60 PDNPQKFVHV HRVFGASNVT KLLNELHPYQ REDAVNSLAY EADMRLRDPV YGCVAIISIL 120 QRNLRQLQQD LARAKFELSK YQQAAAAAAA ASASTGTNNG PHSMAEFIGN AVPNGAQSFI 180 NVGHSAALAS VGGAAACFGQ EQQFSAVHML SRSYEGEPIA RLGGNGGYEF GYSTSMAGGG 240 HMSGLGALGG APFLKSGIAG SDERQGAGQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-53	34	141	7	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-53	34	141	7	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}.
UniProt	Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00211	DAP	Transfer from AT1G65620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB200237	0.0	AB200237.1 Oryza sativa Japonica Group CRLL3 mRNA for LOB domain protein, complete cds.
GenBank	AK071407	0.0	AK071407.1 Oryza sativa Japonica Group cDNA clone:J023089G14, full insert sequence.
GenBank	AK119575	0.0	AK119575.1 Oryza sativa Japonica Group cDNA clone:002-117-B04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634701.1	0.0	LOB domain-containing protein 6
Swissprot	A2WXT0	0.0	LBD6_ORYSI; LOB domain-containing protein 6
Swissprot	Q8LQH4	0.0	LBD6_ORYSJ; LOB domain-containing protein 6
TrEMBL	A0A0E0N626	0.0	A0A0E0N626_ORYRU; Uncharacterized protein
STRING	ORUFI01G43320.1	0.0	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	4e-54	LBD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]