PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G44740.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 464aa    MW: 49727.3 Da    PI: 8.8895
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G44740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.44.9e-48622002128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.............kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                      +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp              +++ +ekew+f+++rd+ky++g+r+nr+t+sgy
  ONIVA01G44740.1  62 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPGienlinkldggaaMAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGY 154
                      79***************************.89***************557999999888764455999************************** PP

              NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      Wkatg d+ + +++++ +glkktLvfy+g+apkg++++W+m+eyrl
  ONIVA01G44740.1 155 WKATGADRMIRAENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 200
                      ********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.84161221IPR003441NAC domain
SuperFamilySSF1019412.75E-5261220IPR003441NAC domain
PfamPF023653.2E-2463200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MHMRRGRAAG GEGEAAAVVV MSRYDNNGHA AAAAAAAVAG GGGGGGNKAA GEVDGHEDDL  60
VMPGFRFHPT EEELIEFYLR RKVEGKRFNV ELITFLDLYR YDPWELPGIE NLINKLDGGA  120
AMAAIGEKEW FFYVPRDRKY RNGDRPNRVT ASGYWKATGA DRMIRAENNR PIGLKKTLVF  180
YSGKAPKGVR SSWIMNEYRL PPADTDRYHK TEISLCRVYK RTGIDDGHGH VSTARSSAHS  240
RGGGAAPVQD NKQGSSSTST PTPPPTPSKL HLLSSECTSP PAIVTDHAAM AAHKAPSPRH  300
HQQQQQLHAA KPCGGYLQNS SMASAAGGDQ QQQFQQDFAA ALYQQYSKNT SGAFASTYSL  360
LNLVNAASMG SSAAAIDELS SLVGHGTPSY INPAAGSHNY SQFLHLPTTP SSHQPTPAPL  420
GTTTAAAAAT LPMSLAAFSD RIWDWNNPIP EAGGRDYSTS TGFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-506322119165NO APICAL MERISTEM PROTEIN
1ut4_B4e-506322119165NO APICAL MERISTEM PROTEIN
1ut7_A4e-506322119165NO APICAL MERISTEM PROTEIN
1ut7_B4e-506322119165NO APICAL MERISTEM PROTEIN
4dul_A4e-506322119165NAC domain-containing protein 19
4dul_B4e-506322119165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029020.0AK102902.1 Oryza sativa Japonica Group cDNA clone:J033113D13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631974.10.0NAC domain-containing protein 35
TrEMBLA0A0E0FWR90.0A0A0E0FWR9_ORYNI; Uncharacterized protein
STRINGONIVA01G44740.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.18e-98NAC domain containing protein 35