PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G44280.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 489aa    MW: 54362.3 Da    PI: 4.4813
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G44280.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS432.33.8e-1321204892374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cA+a+s+ +  +aqa+++ l++++s +gdp qR+aay++e+Laar++ s++++ykal+++e +   +  +l+a+++++e++P+++f++
  ONIVA01G44280.2 120 KQLLFDCATALSDYNVDEAQAIITDLRQMVSIQGDPSQRIAAYLVEGLAARIVASGKGIYKALSCKEPP---TLYQLSAMQILFEICPCFRFGF 210
                      589*****************************************************************9...89999***************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++aN aIlea +ge+rvHiiDfdi+qG Q+++L+q L + +++p +lRiTgv++pe++      l+ +g+rL+k+Ae +g++fef++ v  ++ 
  ONIVA01G44280.2 211 MAANYAILEACKGEDRVHIIDFDINQGSQYITLIQFLKNNANKPRHLRITGVDDPETVqrTVGGLKVIGQRLEKLAEDCGISFEFRA-VGANIG 303
                      ********************************************************99778889***********************.799*** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      d+++ +L+++pgEal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++F +rf e  +yy+alfdsl+a+lpres +
  ONIVA01G44280.2 304 DVTPAMLDCRPGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFQTRFREVYDYYAALFDSLDATLPRESPD 397
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r++vEr++l+reivn++aceg +r+er e ++kWr+r+++aGF+p p+s+++ + +++ll+ + ++ y+ ee++g l +gW +++L++ SaW+
  ONIVA01G44280.2 398 RMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMTMAGFTPCPFSSNVISGIRSLLKSYCDR-YKFEEDHGGLHFGWGEKTLIVSSAWQ 489
                      ****************************************************************66.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.4993470IPR005202Transcription factor GRAS
PfamPF035141.3E-129120489IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MVTADGHSPS SADNSCSDVA KDSPLVSNVS QQNSQSISDN QSSELEVEFD EDDIRMKLQE  60
LEHALLDDSD DILYEISQAG SINDEWADPM KNVILPNSPK ESESSISCAG SNNGEPRTPK  120
QLLFDCATAL SDYNVDEAQA IITDLRQMVS IQGDPSQRIA AYLVEGLAAR IVASGKGIYK  180
ALSCKEPPTL YQLSAMQILF EICPCFRFGF MAANYAILEA CKGEDRVHII DFDINQGSQY  240
ITLIQFLKNN ANKPRHLRIT GVDDPETVQR TVGGLKVIGQ RLEKLAEDCG ISFEFRAVGA  300
NIGDVTPAML DCRPGEALVV NFAFQLHHLP DESVSIMNER DQLLRMVKGL QPKLVTLVEQ  360
DANTNTAPFQ TRFREVYDYY AALFDSLDAT LPRESPDRMN VERQCLAREI VNILACEGPD  420
RVERYEVAGK WRARMTMAGF TPCPFSSNVI SGIRSLLKSY CDRYKFEEDH GGLHFGWGEK  480
TLIVSSAWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6512648826378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0608330.0AK060833.1 Oryza sativa Japonica Group cDNA clone:001-034-C07, full insert sequence.
GenBankAK0674570.0AK067457.1 Oryza sativa Japonica Group cDNA clone:J013106L10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610828.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0E0FWL30.0A0A0E0FWL3_ORYNI; Uncharacterized protein
STRINGOGLUM01G43650.10.0(Oryza glumipatula)
STRINGORGLA01G0333300.10.0(Oryza glaberrima)
STRINGOBART01G39420.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]