PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G43630.3
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 470aa    MW: 51751.7 Da    PI: 6.8033
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G43630.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.91.9e-06231252223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C +Cgk F+r  nL+ H+r H
  ONIVA01G43630.3 231 FCLICGKGFKRDANLRMHMRGH 252
                      5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.89E-5228256No hitNo description
SMARTSM003550.012230252IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.552230257IPR007087Zinc finger, C2H2
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.5E-5232256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035568279312IPR015880Zinc finger, C2H2-like
SMARTSM0035522317339IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MQQGILILTN RVFDSVPWTS LHVLQDLVNR SLLFLHSLGF SLPACIYLMT LKLKSKIKQV  60
KDIVQSMSNR ESQVAGGSSE AQAKQQLVTA DLTCIIIQLI STAGSLLPSM KNPISSNPAL  120
RHLSNTLCAP MILGTNCNLR PSANDEATIP DISKTHDYEE LMNSLNTTQA ESDEMMNCQN  180
PCGGEGSEPI PMEDHDVKES DDGGERENLP PGSYVVLQLE KEEILAPHTH FCLICGKGFK  240
RDANLRMHMR GHGDEYKTAA ALAKPSKDSS SESAPVTRYS CPYVGCKRNK EHKKFQPLKT  300
ILCVKNHYKR SHCDKSYTCS RCNTKKFSVI ADLKTHEKHC GRDKWLCSCG TTFSRKDKLF  360
GHVALFQGHT PALPMDDIKV TGASEQPQGS EAMNTMVGSA GYNFPGSSSD DIPNLDMKMA  420
DDPRYFSPLS FDPCFGGLDD FTRPGFDISE NPFSFLPSGS CSFGQQNGDS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641300.10.0zinc finger protein STOP1 homolog
RefseqXP_015641307.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A0E0FWC00.0A0A0E0FWC0_ORYNI; Uncharacterized protein
STRINGOS01T0871200-030.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-148C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]