PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G43630.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 470aa MW: 51751.7 Da PI: 6.8033 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.9 | 1.9e-06 | 231 | 252 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H ONIVA01G43630.2 231 FCLICGKGFKRDANLRMHMRGH 252 5*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.89E-5 | 228 | 256 | No hit | No description |
SMART | SM00355 | 0.012 | 230 | 252 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.552 | 230 | 257 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 232 | 252 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.5E-5 | 232 | 256 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 68 | 279 | 312 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 22 | 317 | 339 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MQQGILILTN RVFDSVPWTS LHVLQDLVNR SLLFLHSLGF SLPACIYLMT LKLKSKIKQV 60 KDIVQSMSNR ESQVAGGSSE AQAKQQLVTA DLTCIIIQLI STAGSLLPSM KNPISSNPAL 120 RHLSNTLCAP MILGTNCNLR PSANDEATIP DISKTHDYEE LMNSLNTTQA ESDEMMNCQN 180 PCGGEGSEPI PMEDHDVKES DDGGERENLP PGSYVVLQLE KEEILAPHTH FCLICGKGFK 240 RDANLRMHMR GHGDEYKTAA ALAKPSKDSS SESAPVTRYS CPYVGCKRNK EHKKFQPLKT 300 ILCVKNHYKR SHCDKSYTCS RCNTKKFSVI ADLKTHEKHC GRDKWLCSCG TTFSRKDKLF 360 GHVALFQGHT PALPMDDIKV TGASEQPQGS EAMNTMVGSA GYNFPGSSSD DIPNLDMKMA 420 DDPRYFSPLS FDPCFGGLDD FTRPGFDISE NPFSFLPSGS CSFGQQNGDS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641300.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
Refseq | XP_015641307.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q943I6 | 0.0 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A0E0FWC0 | 0.0 | A0A0E0FWC0_ORYNI; Uncharacterized protein | ||||
STRING | OS01T0871200-03 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-148 | C2H2 family protein |
Publications ? help Back to Top | |||
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