PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G43630.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 636aa    MW: 69115.8 Da    PI: 6.7413
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G43630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.8e-06397418223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C +Cgk F+r  nL+ H+r H
  ONIVA01G43630.1 397 FCLICGKGFKRDANLRMHMRGH 418
                      5*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.05E-5394422No hitNo description
SMARTSM003550.012396418IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.552396423IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-4398422IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280398418IPR007087Zinc finger, C2H2
SMARTSM0035568445478IPR015880Zinc finger, C2H2-like
SMARTSM0035522483505IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MENCLRSTGA RNQQGCSSYK ATHPPSRVPF LLPCGASNST RVLLHLQLHI RSDPCYLVPP  60
LSLLRNRLAV RHHGDSTSIS PRSPSTPPLA AAAALAVAVA SADPIPIHPG DREQGAGGLG  120
RSSETSLKAL PSMASNATRN TDPDQQGVRF SSMDQPPCFA RPGQSFPAFP PLFGVQSSSL  180
YLPDDIEAKI GNQFESNPSP NNPTMDWDPQ AMLSNLSFLE QKIKQVKDIV QSMSNRESQV  240
AGGSSEAQAK QQLVTADLTC IIIQLISTAG SLLPSMKNPI SSNPALRHLS NTLCAPMILG  300
TNCNLRPSAN DEATIPDISK THDYEELMNS LNTTQAESDE MMNCQNPCGG EGSEPIPMED  360
HDVKESDDGG ERENLPPGSY VVLQLEKEEI LAPHTHFCLI CGKGFKRDAN LRMHMRGHGD  420
EYKTAAALAK PSKDSSSESA PVTRYSCPYV GCKRNKEHKK FQPLKTILCV KNHYKRSHCD  480
KSYTCSRCNT KKFSVIADLK THEKHCGRDK WLCSCGTTFS RKDKLFGHVA LFQGHTPALP  540
MDDIKVTGAS EQPQGSEAMN TMVGSAGYNF PGSSSDDIPN LDMKMADDPR YFSPLSFDPC  600
FGGLDDFTRP GFDISENPFS FLPSGSCSFG QQNGDS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641300.10.0zinc finger protein STOP1 homolog
RefseqXP_015641307.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A0E0FWB80.0A0A0E0FWB8_ORYNI; Uncharacterized protein
STRINGONIVA01G43630.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-156C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]