PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G43060.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 875aa    MW: 94515 Da    PI: 6.2496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G43060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000266787151355
                      HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLre++P++      K s  + Lek+++++  Lq
  ONIVA01G43060.1 678 RQMIQDRIKELREIVPNS-----AKCSIDTLLEKTIKHMLFLQ 715
                      77899************6.....5899999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.6E-197157IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.04E-4659716No hitNo description
PROSITE profilePS5088810.594665714IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-5678719IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-4678718IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AADSQRLKLV WGDGHYERAA GAPSISGFEA  60
MDLLLKEKAA ALRSGTGRGG GGGEGHAADG AAGHSHDRVD ALVHKAMAQQ VHVVGEGVIG  120
QAALTGLHRW IVHDIVDECE EEDEVLLEMK GQFCAGIQVM EEAAFIDHVR SLFQQLGSST  180
AVVPCGSFVQ DSIMRTPFHK SLGVPTSSHL EDLAGGGNTY NDDMINHQFR HQKSPASTIQ  240
SFNPVQQFYA GPTFCCPVTI ASRCDLFQPD HGSTFTLNSQ SEDNRSTALL KNSVSHSKTS  300
NDAFSHAFNP LNEPNVSISG RRECVSIEQH GSCRNGEMEI TIGRTASSSC TGKTNIINKM  360
DDLLSQDCLV GCQASNATSV NRKFQTMSIV DNTKLQDGSY AIPHAALVDS TQYSDCFQSL  420
LGTIQGSSSS NSNAIHVDTS HNAVHGKSNF CPLGDRNAAN SSDLAELLAS PIPLELTGGN  480
DLFDVLQLQQ KPNGSNNSEV NNRQSMPYGS EQAVKSLIGC VDDDFTGLIT EADPDQLLDA  540
IVSKIITGHK QNVDTSASCS TTVAGFDRPL HSDCHLYTTG PSSGPIFCNF ASVAPVAIKT  600
EGPAAGSRQS SSNIDKSAGC SQTQESYKSQ IRLWVENNHS VGSDSLSTGQ CKRSDEIGKS  660
NRKRSRPGES ARPRPKDRQM IQDRIKELRE IVPNSAKCSI DTLLEKTIKH MLFLQNVAKH  720
ADKLKGSGEP KIVSHEEGLL LKDNFEGGAT WAFEVGTRSM TCPIIVEDLN PPRQMLVEML  780
CKERGIFLEI ADQIRGLGLT ILKGVMEVRK DKIWARFAVE ANKDVTRMEI FLSLVHLLEP  840
STGSSILSAG VENTSLPRDS FFPSSIPATG FSNCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619837.10.0transcription factor LHW isoform X4
TrEMBLA0A0E0FW430.0A0A0E0FW43_ORYNI; Uncharacterized protein
STRINGONIVA01G43060.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161891314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.15e-55conserved peptide upstream open reading frame 7