PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G42140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TALE | ||||||||
Protein Properties | Length: 612aa MW: 65191.6 Da PI: 7.9812 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.6 | 5.6e-10 | 390 | 427 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + ONIVA01G42140.1 390 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 427 554459******************************88 PP | |||||||
2 | BELL | 97.3 | 1.3e-31 | 254 | 323 | 3 | 72 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +e q kk+kL+s++eeV+krY+qy++q+q+v++sFe+vag +a+p+++lAl+a+++hF+cLk +i +q+ ONIVA01G42140.1 254 AEQQWKKTKLISMMEEVCKRYRQYYQQVQAVMASFETVAGFSNAAPFAALALRAMAKHFKCLKSMILNQL 323 5899***************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.1E-35 | 179 | 321 | IPR006563 | POX domain |
Pfam | PF07526 | 1.9E-36 | 184 | 319 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.228 | 368 | 431 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.43E-13 | 371 | 432 | No hit | No description |
SMART | SM00389 | 7.4E-11 | 371 | 435 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.06E-17 | 373 | 440 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 374 | 435 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.5E-19 | 388 | 427 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048457 | Biological Process | floral whorl morphogenesis | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MSSAAGGGGY GGGQGGGAEH HHHHHGHAGH LLLHHHPQHV AGAAVASAAA AAGGQMYHVP 60 QHSRREKLRF PPDAGDSPPP HGHGHGHAPQ QQQQHGSWPP PPAFYSYASS SSSYSPHSPT 120 LAQAQLVAHG LAPPLPQIPT QNFSLSLSSA SSNPPPPQAQ PRRQLGGLAQ ATGPFGPFTG 180 YAAVLGRSRF LGPAEKLFEE ICDVGGAASH VDRTISDEGL LDADPMDGVD HDVVDHDLGG 240 ADRAAADAGP ISGAEQQWKK TKLISMMEEV CKRYRQYYQQ VQAVMASFET VAGFSNAAPF 300 AALALRAMAK HFKCLKSMIL NQLRNTSNKV AVKDGLNKEI AVFGLAGGSS GGAGLQRANS 360 ASAFGQPHNI WRPQRGLPER AVSVLRAWLF EHFLHPYPTD GDKQMLAKQT GLTRNQVSNW 420 FINARVRLWK PMVEEIHNLE MRQMHKHSVV DKGQHSVHHQ AQHSSQCSGN PSVPSDSHPG 480 QSSSITRNHN TAASQGFPDE LSQMSQSIQG QVSFAYNGLT SQHNIASPHH QHQQVGGVGI 540 GGGNGGVSLT LGLHQNNRVC IAEPLPAALP ANLAHRFGLE EVSDAYVMSS FGGQDRHFGK 600 EIGGHLLHDF VG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 9e-17 | 377 | 435 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 9e-17 | 377 | 435 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 7e-17 | 377 | 434 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 7e-17 | 377 | 434 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 8e-17 | 377 | 435 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 8e-17 | 377 | 435 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071330 | 0.0 | AB071330.1 Oryza sativa Indica Group qSH-1 mRNA for qSH-1, complete cds. | |||
GenBank | AB071331 | 0.0 | AB071331.1 Oryza sativa Japonica Group qSH-1 mRNA for qSH-1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641948.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A0E0FVQ8 | 0.0 | A0A0E0FVQ8_ORYNI; Uncharacterized protein | ||||
TrEMBL | D3KTI0 | 0.0 | D3KTI0_ORYRU; Putative transcription factor qSH-1 | ||||
STRING | ONIVA01G42140.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2528 | 38 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 8e-58 | BEL1-like homeodomain 8 |