PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G40180.2

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WOX

Protein Properties

Length: 267aa MW: 30238.7 Da PI: 6.3521

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G40180.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.6	1.6e-21	90	150	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k+ ONIVA01G40180.2 90 RQRWTPTPMQLQILENIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 150 89***************99************************************97 PP
2	Wus_type_Homeobox	104.3	8.2e-34	89	152	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq ONIVA01G40180.2 89 ARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 152 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-17	85	155	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.835	86	151	IPR001356	Homeobox domain
SMART	SM00389	1.9E-14	88	155	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.01E-18	89	153	IPR009057	Homeodomain-like
CDD	cd00086	1.45E-13	90	152	No hit	No description
Pfam	PF00046	2.6E-19	90	150	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEWDKAKASS GEAVDDRGGG EGGLGYVKVM TDEQMEVLRK QISIYATICE QLVEMHRALT 60 AQQDSIAGMR LGNLYCDPLM VPGGHKITAR QRWTPTPMQL QILENIFDQG NGTPSKQKIK 120 DITAELSQHG QISETNVYNW FQNRRARSKR KQAALPNNNA ESEAEADEES PTDKKPKSDR 180 PLHQNIAMRD HNSERISEMH HFDTEHEQIR RMMYASNDSS SRSSGSLGQM SFYDNVMSNP 240 RIDHFLGKVE SPGSFPHMRS GESFDMY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	151	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT829376	0.0	CT829376.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA218C10, full insert sequence.
GenBank	CT829377	0.0	CT829377.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244H01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626455.1	0.0	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	0.0	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A0E0FUZ4	0.0	A0A0E0FUZ4_ORYNI; Uncharacterized protein
TrEMBL	B8ABA9	0.0	B8ABA9_ORYSI; Uncharacterized protein
STRING	OS01T0818400-01	0.0	(Oryza sativa)
STRING	ONIVA01G40180.2	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-71	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]