PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G39780.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 426aa    MW: 46361.8 Da    PI: 8.8801
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G39780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.44.8e-1078135155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s ykGV +++ +g+++A+++d   +n    rkr + g ++t+e Aa+ ++ a++k++g
  ONIVA01G39780.1  78 SIYKGVARHRGSGKYEAHLWDkQGWNPnqTRKRGRQGAYDTEEAAARTYDLAALKIWG 135
                      57*******************555533445599999*******************987 PP
2AP250.55e-16178229155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV  ++ +grW+A+I   +   g +k+ +lg+f+t eeAa a++ a+ +l+g
  ONIVA01G39780.1 178 SKYRGVAKHHHNGRWEARIGRaV---G-KKYLYLGTFDTQEEAATAYDLAAIQLRG 229
                      89****************99966...2.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-778135IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1378145IPR016177DNA-binding domain
CDDcd000187.62E-1778145No hitNo description
PROSITE profilePS5103218.41379143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-1379143IPR001471AP2/ERF domain
SMARTSM003802.4E-1779149IPR001471AP2/ERF domain
PfamPF008472.2E-11178229IPR001471AP2/ERF domain
CDDcd000185.10E-24178239No hitNo description
SuperFamilySSF541713.99E-18178239IPR016177DNA-binding domain
PROSITE profilePS5103218.584179237IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-19179238IPR001471AP2/ERF domain
SMARTSM003801.9E-27179243IPR001471AP2/ERF domain
PRINTSPR003675.4E-5180191IPR001471AP2/ERF domain
PRINTSPR003675.4E-5219239IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MVSMRKKKKA FAVAAATTLL SPPRSSSSSS SSTASSCIVP PRTESGKKKS KHRKRAKDGT  60
GGDDDAAAVA AAPRKGSSIY KGVARHRGSG KYEAHLWDKQ GWNPNQTRKR GRQGAYDTEE  120
AAARTYDLAA LKIWGSDHVL NFPIDTYRKE LERMQRMTRE EYLATLRRKS SGFSRGVSKY  180
RGVAKHHHNG RWEARIGRAV GKKYLYLGTF DTQEEAATAY DLAAIQLRGR SAVTNFDASC  240
YTYTDHLPPP PPPQPPSVCK TEPELEPPQP AAPPGSESLL RPKMEPCDDW EQPAICPSLR  300
DADDADHAIA EILPALCMDR ADFEARYPAR RARDAAADGW STSSDDVAAA SVDDDVLRSL  360
PDDVGFVDDV ESLFLDAPGP AAAAAAPMPD DVERAVQRAP SAASRRANAA AVSYAISSLA  420
SGRWWY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032470.0AP003247.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0425G02.
GenBankAP0035700.0AP003570.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0432B10.
GenBankAP0043310.0AP004331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0085D07.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646190.20.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0E0FUT50.0A0A0E0FUT5_ORYNI; Uncharacterized protein
STRINGONIVA01G39780.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-75AP2 family protein