PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G39770.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 346aa MW: 36924.4 Da PI: 10.1122

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G39770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.7	3.9e-16	276	326	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN +Lk + +el +++ ONIVA01G39770.1 276 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENVRLK-RQKELDELI 326 79***************************************9.666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-14	271	319	No hit	No description
SMART	SM00338	8.0E-11	272	344	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.392	274	319	IPR004827	Basic-leucine zipper domain
CDD	cd14707	7.09E-25	276	330	No hit	No description
SuperFamily	SSF57959	4.0E-11	276	321	No hit	No description
Pfam	PF00170	6.5E-13	276	319	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	279	294	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGSQTMASKA GGGGVARRGG GRMRSLGRQG SMYSLTLDEV QSQLGEPLHS MNLDELLRSV 60 FPDGLAIADG AGAGAGATTS SQQHQPGSGL LRQGSITMPP ELSKKTVDEV WKGIQAAPKR 120 NAETGGGGGG GGGRRRRERQ PTLGEVTLED FLVKAGVVTQ GSLKELSDVG NVDPVGRGVT 180 ATGTVDLAPG SHWIEQYKQQ IASTDAHHHG QQGVQGAYFP NRLVPQPLNV GPGAILEPSY 240 SDGQTSSGMI GGMSDSQTPG RKRGMSGDVA DKLMERRQKR MIKNRESAAR SRARKQAYTN 300 ELENKVSRLE EENVRLKRQK ELDELICAVP VPEPKYQLRR TSSADF

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGSQTMASKA GGGGVARRGG GRMRSLGRQG SMYSLTLDEV QSQLGEPLHS MNLDELLRSV  60
FPDGLAIADG AGAGAGATTS SQQHQPGSGL LRQGSITMPP ELSKKTVDEV WKGIQAAPKR  120
NAETGGGGGG GGGRRRRERQ PTLGEVTLED FLVKAGVVTQ GSLKELSDVG NVDPVGRGVT  180
ATGTVDLAPG SHWIEQYKQQ IASTDAHHHG QQGVQGAYFP NRLVPQPLNV GPGAILEPSY  240
SDGQTSSGMI GGMSDSQTPG RKRGMSGDVA DKLMERRQKR MIKNRESAAR SRARKQAYTN  300
ELENKVSRLE EENVRLKRQK ELDELICAVP VPEPKYQLRR TSSADF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	139	GRRRRERQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627754.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	3e-81	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0E0FUT4	0.0	A0A0E0FUT4_ORYNI; Uncharacterized protein
STRING	ONIVA01G39770.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2707	38	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-71	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]