PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G38120.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 392aa    MW: 41475.2 Da    PI: 6.5818
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G38120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-052823191254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  ONIVA01G38120.1 282 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 319
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.731270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.40E-6280324No hitNo description
SuperFamilySSF474591.83E-11280334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0035281325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9284327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MADEWWSASQ RSHGTSACSA APSPLTADRV SCGWTSPAAA AAAESTSSIT FQDPSRSSAA  60
HHQPLSDAAS SLGDPHMVDW TQAFLSGRSD ASFQAVLQDD MAASTRPFRA QPTAADEAVM  120
TNPFRDMGVG QGLLLDQASA PLHGLSFDAG EPAVAPATHS ITTSFGDYQH SASYDAAAAV  180
MQFSQTPRAP SLPAAAQMQF LSGSYQLPFG GAPPLPSQLL LQAMQPKPSC SSNANTLLAK  240
SNSGSAQQIC SSEGRKSVSD SPAAAKRPRI EAPSPLPTFK VRKEKLGDRI TALQQLVSPF  300
GKTDTASVLH EAIEYIKFLH EQVASLSSPY LKNGNPLQHF QQKGSESTKD AEQPKPDLRS  360
RGLCLVPVAS TYTVASETVP EFWHPTFGGT FR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633446.10.0transcription factor bHLH123
TrEMBLA0A0E0FU830.0A0A0E0FU83_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N3E40.0A0A0E0N3E4_ORYRU; Uncharacterized protein
STRINGORUFI01G36520.10.0(Oryza rufipogon)
STRINGONIVA01G38120.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-52bHLH family protein