PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G37010.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 275aa    MW: 30105.7 Da    PI: 6.2596
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G37010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-08131191454
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...............TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.as............kapskKlsKaeiLekAveYIksL 54 
                       h +rEr RR+r+ ++++ L+ +lP+ as              +     K +i+  A +YI++L
  ONIVA01G37010.1 131 RHIMRERLRRERLSQGYADLQAILPTgASsskvlvkslirnYMS---GGKNTIVAAAANYIREL 191
                      599***********************997777777775444222...33556777888888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014477.32E-53847No hitNo description
SuperFamilySSF474591.44E-10123206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.547127191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-7129194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-5131191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MENDDDVEHP FYYFVHDDAA AGVDDHEELL ASLGFLLPPP PPPPPPPQPD QGRSAFAAYQ  60
STAAMASSSS SSESLSRRYH SSASNVHRRM YRFLRSIYDD AGDDAGATAE MQPAEGEQQQ  120
AAPSGGSARF RHIMRERLRR ERLSQGYADL QAILPTGASS SKVLVKSLIR NYMSGGKNTI  180
VAAAANYIRE LEGRKGWLCA QNELLERTTP KPGAGMVVKV RAESELGSTV DVFEAVLRRL  240
KAMDELQVTA IQSWFGAGGM WMDVAVESKK QVRST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032650.0AP003265.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0490D09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635057.11e-154transcription factor BHLH148-like
TrEMBLA0A0E0FTU60.0A0A0E0FTU6_ORYNI; Uncharacterized protein
STRINGONIVA01G37010.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127302432