PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G36850.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 526aa    MW: 55420.5 Da    PI: 8.6394
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G36850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601071.5e-333194341100
           DUF260   1 aCaaCkvlrrkCakdCvlapyf................paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                      +C aCk+lrr+C+++Cv+ap+f                 ++ +++fa+vh++FGasnv kll+++p   r+da+++++yeA+ar+ dPvyG+vg
  ONIVA01G36850.1 319 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagvggrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRRDAARTVCYEAQARIADPVYGSVG 412
                      7*********************************998555559*************************************************** PP

           DUF260  79 vilklqqqleqlkaelallkee 100
                      +il+lq+q++ l+ +l++l+++
  ONIVA01G36850.1 413 TILALQHQVSLLQGQLSVLESQ 434
                      ****************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.170.270.101.4E-3148228No hitNo description
SuperFamilySSF821992.94E-3049228No hitNo description
PfamPF050331.1E-852171IPR007728Pre-SET domain
PROSITE profilePS508678.558119176IPR007728Pre-SET domain
PROSITE profilePS5089120.628318435IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-37319432IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MRNSATPAAV GELAELVLPW LPPQDLAAAA SASRALRAAA SSVSAGRAAD AAHGLEPHPI  60
PFDNLVDGKP YAYFLYTPFS LTPSSASASP RRAQPWGRTW ARPPGPTWPR SDLGGFPSSG  120
CACAQGACGG ARGCPCADPE AEAVGLGSEA GMGSLRECGD GCACGPSCGN RRTQLGVTVR  180
LRVVRHREKG WGLHAAEVLR RGQFVCEYAG ELLTTEEARR RQGLYDELAS VDDWPRRAAR  240
AHAPGRHGSV ARHARAHFKN PSLPPWYPRA RALALAHTHA HMHAAQPPGS SKRRGAVERP  300
ASGAGLQAEE ASSAGPGAPC GACKFLRRRC VPGCVFAPHF SGCGGSGVGA GVGGRGRERG  360
AAEFAAVHRV FGASNVAKLL SRVPAALRRD AARTVCYEAQ ARIADPVYGS VGTILALQHQ  420
VSLLQGQLSV LESQLFNLRV ALASAHPDTP PQHFVVLQPA HSAASTPNQV VVNYDDLPHA  480
VDLMDAEPAA LRGLESLQLS QPLQREEDEG HRDMNLFSDS VGQRQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-303124364112LOB family transfactor Ramosa2.1
5ly0_B4e-303124364112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2424680.0AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0FTR90.0A0A0E0FTR9_ORYNI; Uncharacterized protein
STRINGONIVA01G36850.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1125044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-22LOB domain-containing protein 20