PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA01G35730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 457aa MW: 48345.1 Da PI: 7.3462 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.5 | 4.8e-34 | 137 | 247 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssaseceaesssssasnsssg... 88 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai+el++ + + + a++++ +a ++ + ONIVA01G35730.1 137 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAIDELPDRaeaP---PPPAAASTEQPEATEQATStsy 227 689**************************************************************5441...3222111222111111111223 PP TCP 89 ...................k 89 + ONIVA01G35730.1 228 gfgnttggtmtsaasaaagS 247 34445555554444333330 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-31 | 139 | 256 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.971 | 140 | 198 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 457 aa Download sequence Send to blast |
MSGFTNKDGR QNLAPCFNFR SSPFRLTVGE RELKLEEDKN QLSKGLDPWT SNPTASASTL 60 HYLLQEKERA QQAHEQLQIY QQQQGFGSFL QHRIRQPASR GPGGGGGGGD GGGSSGESTP 120 VDALATAFGA GRIVRSAAGR KDRHSKVCTA RGLRDRRVRL AAHTAIRFYD VQDRLGYDRP 180 SKAVDWLMRN AKAAIDELPD RAEAPPPPAA ASTEQPEATE QATSTSYGFG NTTGGTMTSA 240 ASAAAGSFLP HSLGADRVSD SVKSLFPSSS TASGAASAGH DEYRGSPPDL LSRTTSNQQP 300 QELCLTLQSN QHQIFSHVSS NHHGMISSAG VPGWPDHSQR MQAWHAPENS TGDGRGGGNG 360 DGYMFAMPSR QGLDQSQLFS HGEPLQSSGR GWASARAWLD PLPVAAIHHQ PSTMAAGQVG 420 FGHLVGGAGG GGGFMGFLAP AAQRLEGEEE HGSEVIR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-20 | 145 | 199 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-20 | 145 | 199 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639296.1 | 0.0 | transcription factor PCF7 | ||||
Swissprot | A2WV68 | 0.0 | PCF7_ORYSI; Transcription factor PCF7 | ||||
TrEMBL | A0A0E0FTB1 | 0.0 | A0A0E0FTB1_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G35730.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12056 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15030.3 | 3e-37 | TCP family protein |