PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G33150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 322aa MW: 35767.6 Da PI: 5.2783 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 33.4 | 1.2e-10 | 69 | 165 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrt.......sessstcpyfd 83 +W++ + aL++a ++ r +r++l++ W evs+ ++ + s +qC+++++ l+k+y+k+ke+++ + +s s++ yfd ONIVA01G33150.1 69 EWSEGSTFALLDAWGDRFVRAGRRSLRADEWLEVSRLAaaaaSRPPGYYSEQQCRNRIDTLRKKYRKEKERMRLAArrpdrpdRPSPSKWIYFD 162 5**********************************9997776444455799*******************998653111111134567888888 PP trihelix 84 qle 86 +++ ONIVA01G33150.1 163 KMQ 165 886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.8E-17 | 68 | 167 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MDDGAAPAAA AAAEFPSPSP SSSGASPSPR SKRRRTDRYA QGFEFAPRPA PATATATAPA 60 PTPARGTPEW SEGSTFALLD AWGDRFVRAG RRSLRADEWL EVSRLAAAAA SRPPGYYSEQ 120 QCRNRIDTLR KKYRKEKERM RLAARRPDRP DRPSPSKWIY FDKMQSLMCP PPLPLQPPVV 180 TRRRDTQPVP RQSWGLDAAE YVLGGCENAG TRDSGSGAEL GEEQPNEAGA GKGEDFELLV 240 ESIRKLGDVY ERVESSKRQH MAEVEWLRRD LQRDLEVRRR EILEKAQAEI ARLTEEDGEE 300 GDLKEGEGDD NKRFGDDGGG EE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623327.1 | 0.0 | uncharacterized protein LOC4324693 | ||||
TrEMBL | A0A0E0FSB0 | 0.0 | A0A0E0FSB0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G33150.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8090 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 9e-26 | Trihelix family protein |