PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G32840.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 223aa    MW: 23547.1 Da    PI: 7.1761
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G32840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.81.9e-17146195159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYG+K         +YYrC+++gC+vkk+ver+++dp++v++tYeg Hnh 
  ONIVA01G32840.1 146 LDDGYKWRKYGKK---------NYYRCSTEGCNVKKRVERDKNDPRYVVTTYEGIHNHV 195
                      59**********9.........5***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-20133195IPR003657WRKY domain
SuperFamilySSF1182906.15E-20139196IPR003657WRKY domain
PROSITE profilePS5081122.986141197IPR003657WRKY domain
SMARTSM007742.4E-20146196IPR003657WRKY domain
PfamPF031062.2E-12147194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAAAAAGAST PFSFCRHGSH AEYDDAVFSG SWMARRPSAA PHGGGASGSS FGAAFRQQHL  60
DLLDYLSDDQ GVPAPPPPAA VPSASYVTPA PAMGPAEPVV PDAVAAAGGG YPRSVAAAAA  120
AVAGEGRDRT MTDKIAFRTR SDDEILDDGY KWRKYGKKNY YRCSTEGCNV KKRVERDKND  180
PRYVVTTYEG IHNHVCPGTV YYAAQDAASG RFFVAGISHP DLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-18137197877Probable WRKY transcription factor 4
2lex_A3e-18137197877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635650.13e-98WRKY transcription factor WRKY24
TrEMBLA0A0E0FS701e-161A0A0E0FS70_ORYNI; Uncharacterized protein
STRINGONIVA01G32840.11e-162(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.17e-29WRKY DNA-binding protein 51