PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G29690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 293aa MW: 31481 Da PI: 9.3666 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76.2 | 7.5e-24 | 18 | 143 | 8 | 126 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevlsk 95 hPtd+elv++yL+++v++ ++ + ++e+d+y ++P dL k ++ +++ wyfF++ ++k++ g+r+ ra+ g W++ k+v+ ONIVA01G29690.1 18 HPTDQELVTKYLRRHVDSGGNPW-RYVHEADVYAADPDDLTgKyspaVASDGSRAWYFFTTVRSKSTGGQRRARAVGdGGCWHSEAGAKDVVGG 110 9*******************999.88**************84366644444777********************6553899***9999999986 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmhey 126 + + +g ++ + f +++ p+ +++ W+m e ONIVA01G29690.1 111 irSPRPIGRRQFFSFVNKEGPRRVRSGWIMVEI 143 656777************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 33.802 | 11 | 165 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.24E-35 | 15 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-14 | 15 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MSPSRPDEAD PAADFGSHPT DQELVTKYLR RHVDSGGNPW RYVHEADVYA ADPDDLTGKY 60 SPAVASDGSR AWYFFTTVRS KSTGGQRRAR AVGDGGCWHS EAGAKDVVGG IRSPRPIGRR 120 QFFSFVNKEG PRRVRSGWIM VEIGLKYAQQ NASSDELVLC KVYRSPRAPP AAAAANKSMA 180 APPPTATKSK TEEATPPPDD VKPVVAAAQT PDTKILRAAK EAAAAAATGC KRKADVKSSG 240 ARRGKRLCSR CRAETSESDS ETAVLDRSPS IEDETADSSE IHGSSDGKFI RFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-14 | 15 | 163 | 19 | 166 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621657.1 | 0.0 | NAC domain-containing protein 2 | ||||
TrEMBL | A0A0E0FQY8 | 0.0 | A0A0E0FQY8_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0N0N8 | 0.0 | A0A0E0N0N8_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2WTQ6 | 0.0 | A2WTQ6_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI01G29330.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA01G29690.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4011 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 1e-15 | NAC domain containing protein 47 |