PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G29400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 32531.6 Da PI: 9.796 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.1 | 1.1e-09 | 28 | 73 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 +W++eE +++ +a + l + +W+++ar ++ gR++ ++ ++++++ ONIVA01G29400.1 28 KWSPEENKQFERALAGLDLRcpDWDRVARAIP-GRSALEVMNHFRDL 73 8*****************99************.***********976 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.6e-15 | 141 | 185 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky ONIVA01G29400.1 141 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 185 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.5E-5 | 25 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-5 | 27 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.284 | 28 | 74 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.13E-7 | 28 | 73 | No hit | No description |
SuperFamily | SSF46689 | 2.99E-8 | 28 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-8 | 28 | 73 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.359 | 134 | 190 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.8E-18 | 135 | 190 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.7E-17 | 137 | 188 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.3E-12 | 138 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-13 | 138 | 188 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.66E-12 | 141 | 186 | No hit | No description |
Pfam | PF00249 | 9.9E-13 | 141 | 185 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MMMRDVCMEV LPPMDHYASR GNWFMARKWS PEENKQFERA LAGLDLRCPD WDRVARAIPG 60 RSALEVMNHF RDLELDVQQI ENGMVPFPVY GAAAAGGAFT LQWDSAHGVG DFRNAYRFGG 120 GGGGKRHFGR TPEQERKKGV PWTEEEHKLF LLGLKKYGKG DWRNISRNFV QTRTPTQVAS 180 HAQKYFIRLN SGGKDKRRSS IHDITTVNLT DDRPPSPSQS SLISNQSNTS TLTAAVAPFS 240 STADVKPQNA ANASFNSPSR TLGMAGYGMG LQDQGLQCGG PLHDQLAASR SILF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-13 | 18 | 90 | 3 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067964 | 0.0 | AK067964.1 Oryza sativa Japonica Group cDNA clone:J013124L02, full insert sequence. | |||
GenBank | EU837250 | 0.0 | EU837250.1 Oryza sativa Japonica Group clone KCB707G04 myb transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621817.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 3e-83 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0E0FQU5 | 0.0 | A0A0E0FQU5_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G29400.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7886 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-63 | MYB family protein |
Publications ? help Back to Top | |||
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