PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G28540.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 349aa    MW: 37572.5 Da    PI: 9.8047
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G28540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_166.74.1e-21212274163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      +ke+krerrkq+NRe+ArrsR+RK+ae+eeL++kv+ L+aeN++L+ e+++l++ ++kl+ e+
  ONIVA01G28540.1 212 DKESKRERRKQSNRESARRSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLRLEN 274
                      689********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.4E-25382IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1704.1E-17209271No hitNo description
SMARTSM003381.7E-20212276IPR004827Basic-leucine zipper domain
PfamPF001703.7E-19213274IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.599214277IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-11216270No hitNo description
CDDcd147028.64E-22217265No hitNo description
PROSITE patternPS000360219234IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGKAPSPPKD HPALSPYLDW SNMQAYYGPG ILPPTFFSPG IAAGHTPPPF IWGPQPLVPS  60
AFGKPYAAIY PPGGAFSHPF MPLMVSPLSM EPAKSVNSKD NCSNKKMKEI DGAAMSTGSG  120
NSEKTSGDCS LEGFSDGNNQ KASGTPKKRS IDDRPKSGVE TGGALTPNDR PSEQAALPNL  180
CIPVTAIKPD VSTASDFRVI ATPVTEVPTK DDKESKRERR KQSNRESARR SRLRKQAETE  240
ELARKVELLT AENTSLRREI SRLTESSKKL RLENSALMEK LTETGPDEAQ EVPPVKTKAQ  300
QARGVENFLS MIDKTGTPRS SGHMDHAIAT PKLRQLLGSG LATDAVAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228234RRSRLRK
2228235RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6069410.0AY606941.1 Oryza sativa (indica cultivar-group) salt-stress inducible bZIP protein mRNA, complete cds.
GenBankCT8338380.0CT833838.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236J06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650461.10.0common plant regulatory factor 1 isoform X1
RefseqXP_015650471.10.0common plant regulatory factor 1 isoform X1
TrEMBLA2WTF10.0A2WTF1_ORYSI; Uncharacterized protein
STRINGOGLUM01G29060.10.0(Oryza glumipatula)
STRINGORGLA01G0206000.10.0(Oryza glaberrima)
STRINGOBART01G25300.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.12e-50G-box binding factor 3