PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G26320.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 335aa MW: 36344.2 Da PI: 6.505

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G26320.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	104.9	6.8e-33	27	118	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 F+ k+y+++ d++++ l++w +++nsfvv+d+ f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++ weF+h+sF +g+++ll ONIVA01G26320.1 27 FVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHLLP 111 9**************************************************************999.........************* PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 +i r+k+ ONIVA01G26320.1 112 RIVRRKK 118 **987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.4E-36	22	116	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	7.53E-34	23	116	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.5E-51	23	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.9E-16	27	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.2E-29	27	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.9E-16	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	66	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.9E-16	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MDGLHTELAL GLIGCCGGDG QQQTAPFVAK TYQMVCDPRT DALVRWGRDN NSFVVVDPAA 60 FSQLLLPCFF KHGNFSSFVR QLNTYGFRKV HPDRWEFAHE SFLRGQTHLL PRIVRRKKRG 120 EGGGGGGGAS CSFSGGAGEH QVAAAAASVG MSGEEEDAAE DVLAKEAALF EEVQRLRHEQ 180 TAIGEELARM SQRLQATERR PDQLMSFLAK LADDPNAVTG HLLEQAAERK RRRQHLPSHE 240 PTVCPLPPAP PPQPPQPLLA LAGAAAMDGT YWWTTEHHHQ MKPMTVLPSL EPPTASCGVH 300 QVPELGGGGV MGLTTDGEAK VEPPFPFCLL GQAFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-22	17	116	19	129	Heat shock factor protein 1
5d5v_B	3e-22	17	116	19	129	Heat shock factor protein 1
5d5v_D	3e-22	17	116	19	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	232	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069479	0.0	AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636084.1	0.0	heat stress transcription factor C-1a
Swissprot	Q6VBA4	0.0	HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBL	A0A0E0FPQ2	0.0	A0A0E0FPQ2_ORYNI; Uncharacterized protein
STRING	ONIVA01G26320.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	9e-57	heat shock transcription factor C1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]