PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G23570.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 298aa    MW: 31143.6 Da    PI: 8.4134
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G23570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.67e-201471941359
                      E--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  13 KevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      K+ kg++ pr+YYrCt a gCpvkk+v+r+++d++v+++tY g Hnh+
  ONIVA01G23570.1 147 KTAKGNPWPRGYYRCTGApGCPVKKQVQRCNHDTSVLVTTYDGVHNHP 194
                      889*************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007745.5E-19147195IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-19147194IPR003657WRKY domain
PfamPF031061.9E-16147194IPR003657WRKY domain
SuperFamilySSF1182907.98E-17147195IPR003657WRKY domain
PROSITE profilePS5081120.771147196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MNTFTFFRDE VQKASEKVHR HHANDDEAGL FLSLGLSLGS SPDACQCHAS KKDEADAGNG  60
GGDGYLALAL RCAPAAGEPM VHPKRQRATT NSSSSSSICG EYGGGAAAAT VPAGHDDDDR  120
SCMITAASTA NRPGRVVLRT RCSAPTKTAK GNPWPRGYYR CTGAPGCPVK KQVQRCNHDT  180
SVLVTTYDGV HNHPITPYAA ALPPSSSSSS SAAAAMLASS SSSSTWSELQ RAMPAAQSSW  240
SQRNYPIQAD VVAKAIWDPK FQATVAAAVA SYVRDREQSA RVAGGKGAGE LFNLAPPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-151471972675WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642021.11e-164probable WRKY transcription factor 72
TrEMBLA0A0E0FNQ20.0A0A0E0FNQ2_ORYNI; Uncharacterized protein
STRINGONIVA01G23570.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143192226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-26WRKY DNA-binding protein 9