PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G22980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 265aa MW: 29193.6 Da PI: 8.8086 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.7 | 5e-14 | 82 | 129 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++N+ f L++l+P+ + K++Ka+iL +++ Y+k+L+ ONIVA01G22980.1 82 KNHVMSERRRREKLNEMFLILKSLVPSiD------KVDKASILSETIAYLKELE 129 5899***********************66......****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.967 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.88E-14 | 82 | 133 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.2E-17 | 83 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-18 | 83 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-11 | 83 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.3E-16 | 85 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MEIDDDVIYS LIRNWDNDSS SSWIELLDHA IVSPASCFVP WKRTELDKEA VAGGEAAQRL 60 LKKVVGGGGA WMNRAAGSCS IKNHVMSERR RREKLNEMFL ILKSLVPSID KVDKASILSE 120 TIAYLKELER RVQELESGKK VSRPAKRKPR SETIISGGGG GGGAGAVKEH HHWVLSESQE 180 GTPSDVRVIV MDKDELHLEV QCRWKELMMT RVFDAIKSLR LDVLSVQASA PDGLLGLKIR 240 AKYASSAAVV PAMISETLRT AVAGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-12 | 83 | 139 | 8 | 64 | Transcription factor MYC2 |
5gnj_B | 2e-12 | 83 | 139 | 8 | 64 | Transcription factor MYC2 |
5gnj_E | 2e-12 | 83 | 139 | 8 | 64 | Transcription factor MYC2 |
5gnj_F | 2e-12 | 83 | 139 | 8 | 64 | Transcription factor MYC2 |
5gnj_G | 2e-12 | 83 | 139 | 8 | 64 | Transcription factor MYC2 |
5gnj_I | 2e-12 | 83 | 139 | 8 | 64 | Transcription factor MYC2 |
5gnj_M | 2e-12 | 83 | 139 | 8 | 64 | Transcription factor MYC2 |
5gnj_N | 2e-12 | 83 | 139 | 8 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 92 | ERRRRE |
2 | 88 | 93 | RRRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002908 | 0.0 | AP002908.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0013G02. | |||
GenBank | AP003310 | 0.0 | AP003310.5 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0022F12. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878345.1 | 0.0 | anthocyanin regulatory R-S protein | ||||
Swissprot | P13027 | 1e-68 | ARRS_MAIZE; Anthocyanin regulatory R-S protein | ||||
TrEMBL | A0A0E0FNG3 | 0.0 | A0A0E0FNG3_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G22980.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP932 | 33 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63650.3 | 5e-31 | bHLH family protein |
Publications ? help Back to Top | |||
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