PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G22920.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 447aa    MW: 49721.7 Da    PI: 5.8861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G22920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.2e-14294341355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++h + ErrRR+++N+ f +L++l+P+ +      K++Ka+iL +++ Y+k+L+
  ONIVA01G22920.1 294 KNHVMSERRRRENLNEMFLTLKSLVPSiD------KVDKASILAETIAYLKELE 341
                      5899***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-3010144IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.202291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.29E-15294345No hitNo description
SuperFamilySSF474593.27E-18294355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-18295351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11295341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-16297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MELTAEQLLL QRSEQLRELY SSLLSGECAD QQRRRRPVTA LSPEDLGNME WFYMVCMTYA  60
FRPGQWYTSL IYSIISKSFA SNGCAWLCNA QSADSKAFPR KLLAKNASIQ TIVCVPFMNG  120
VLELGTTDPV PEEPNVVNRI TTAFWEFQLL ACSDEPISSG TPSSPSSPLT KETGDANTVL  180
IDDLFLAHSA AGGDQEDHQL GNDLGQQQAA TAMEIDDDMI YSLIRNWDND SSSSWIELLD  240
HVVVSPASCF VPWKRTELDK QAVAGGGEAA QRLLKKAVGG GGAWMNRAAD SSIKNHVMSE  300
RRRRENLNEM FLTLKSLVPS IDKVDKASIL AETIAYLKEL ERRVQELESG KKVSRPPKRK  360
PCSDGAVKEH HHWVLSESQE GTPSNVRVIV MDKDELHLEV HCRWKELMMT RLFDAIKSLR  420
LDVLSVQASA PNGLLGLKIR AKVVSLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299304ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638330.10.0anthocyanin regulatory R-S protein
TrEMBLA0A0E0FNF70.0A0A0E0FNF7_ORYNI; Uncharacterized protein
STRINGONIVA01G22920.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-49bHLH family protein