PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G22770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 230aa MW: 26148.1 Da PI: 9.6025 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 70.2 | 4.3e-22 | 18 | 100 | 20 | 101 |
DUF260 20 pyfpa.eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +++ + +++ ++ n+++lFG++n+ +++a+ +e+r+d+mss+ yeA+ +ar+P++Ga+gv+++l++++e++ a+l++l+++l ONIVA01G22770.1 18 RVILHgDEKVRLLNAQHLFGTRNIRCFVQATLPEKRDDLMSSIKYEAQLWARNPQSGATGVMWHLERKVERELAKLSKLRQKL 100 444332668999******************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.948 | 1 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-17 | 21 | 97 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MRHLQGAEDG VLAGVPARVI LHGDEKVRLL NAQHLFGTRN IRCFVQATLP EKRDDLMSSI 60 KYEAQLWARN PQSGATGVMW HLERKVEREL AKLSKLRQKL EMCKNLAAKK SILEAKGVGV 120 RQVTSKEQEQ ERQYQACPAR ISAWTLRLFV HRSACEIPIS QTESRIACMQ FFGRAFMAFV 180 GQIQEEAINH DAEDAHYDFF PLQAHLVLDS PRNPHPLGRP PLTRSHNVHG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003308 | 0.0 | AP003308.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1129G05. | |||
GenBank | AP003413 | 0.0 | AP003413.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1151A10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0FND6 | 1e-171 | A0A0E0FND6_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G22770.1 | 1e-172 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19872 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72980.1 | 7e-09 | LOB domain-containing protein 7 |