PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G22740.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 175aa    MW: 18252.6 Da    PI: 5.6026
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G22740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260103.32.1e-32261321100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpa..eqp...kkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqql 87 
                      aCaaC++l+r+C+++C+la++fpa  +qp   + f+n+ +lFG+ nv+ +l a+  ++ +r+da+ s++yeA+ara+dPv+Ga+gv+++l+++l
  ONIVA01G22740.1  26 ACAACAHLGRACPTGCPLARCFPAagNQPadgRLFRNAFRLFGVGNVVGFLLAAggDPGKRRDAAVSVAYEADARADDPVRGAHGVVMDLEREL 119
                      7*********************996644456699*****************999889999********************************** PP

           DUF260  88 eqlkaelallkee 100
                      ++lkaela++++ 
  ONIVA01G22740.1 120 DCLKAELATAQSA 132
                      ********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.7325133IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-2926130IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAQPWRPFVA DISPVAVADD DDPPAACAAC AHLGRACPTG CPLARCFPAA GNQPADGRLF  60
RNAFRLFGVG NVVGFLLAAG GDPGKRRDAA VSVAYEADAR ADDPVRGAHG VVMDLERELD  120
CLKAELATAQ SALARHRQYA QPPPPPPPPP PDALDRARAL NYFCHGCCGD VDGAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-162513610114LOB family transfactor Ramosa2.1
5ly0_B7e-162513610114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638310.14e-94LOB domain-containing protein 24
TrEMBLA0A0E0FND31e-119A0A0E0FND3_ORYNI; Uncharacterized protein
STRINGONIVA01G22740.11e-119(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18117810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-15LOB domain-containing protein 1