PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G21910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 452aa MW: 48959.5 Da PI: 6.3877 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 85.3 | 5.5e-27 | 295 | 344 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i +edl++yF++pi++AA+e++v+lTvLK++CR++G++RWPhRk+ksl ONIVA01G21910.1 295 DHIGFEDLRRYFYMPITKAAREMNVGLTVLKKRCRELGVARWPHRKMKSL 344 6899********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.496 | 284 | 364 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.8E-21 | 297 | 344 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MEMHECCYYG GSTGGDWLNP LAAIPPPCSS SSSSWSSQLL LLSDHDDVLL HSAGDHGGAV 60 AGIGGACMTA DLVNLNGFDH VVIRDEEMEM AAGYLPVAAS AAAAADVDHY MYQQFQLEPD 120 QFVSTLPAVA VAVAVAATAG GGSHDDELLR MPFTDIDLDA FADARDVVVG VGEPKPSPQH 180 TLDAAIALPA VGGGGAHHFG TQDDDVKFDV TKQRNDAALA GDDSLSMVIV ESYEMGMRRH 240 AAEQEQEQKP KIITSAATTL TPLPLPPPPP PPPRVTRSRR DGSSAATAGG KTRLDHIGFE 300 DLRRYFYMPI TKAAREMNVG LTVLKKRCRE LGVARWPHRK MKSLKSLILN EMGSKGMSAA 360 AMRRELEALE NCCALMERNP AVELTERTKK LRQACFKENY KRRRAAAVDV LDLDHCFSFA 420 AGHCHHHHHQ QLALPPPPAA AADHRRRDFF GY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003933 | 0.0 | AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06. | |||
GenBank | AP004258 | 0.0 | AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638205.1 | 0.0 | uncharacterized protein LOC107276829 | ||||
TrEMBL | A0A0E0FN29 | 0.0 | A0A0E0FN29_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G21910.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12888 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 5e-31 | RWP-RK domain-containing protein |