PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G21910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 452aa    MW: 48959.5 Da    PI: 6.3877
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G21910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK85.35.5e-27295344352
           RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ++i +edl++yF++pi++AA+e++v+lTvLK++CR++G++RWPhRk+ksl
  ONIVA01G21910.1 295 DHIGFEDLRRYFYMPITKAAREMNVGLTVLKKRCRELGVARWPHRKMKSL 344
                      6899********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.496284364IPR003035RWP-RK domain
PfamPF020423.8E-21297344IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MEMHECCYYG GSTGGDWLNP LAAIPPPCSS SSSSWSSQLL LLSDHDDVLL HSAGDHGGAV  60
AGIGGACMTA DLVNLNGFDH VVIRDEEMEM AAGYLPVAAS AAAAADVDHY MYQQFQLEPD  120
QFVSTLPAVA VAVAVAATAG GGSHDDELLR MPFTDIDLDA FADARDVVVG VGEPKPSPQH  180
TLDAAIALPA VGGGGAHHFG TQDDDVKFDV TKQRNDAALA GDDSLSMVIV ESYEMGMRRH  240
AAEQEQEQKP KIITSAATTL TPLPLPPPPP PPPRVTRSRR DGSSAATAGG KTRLDHIGFE  300
DLRRYFYMPI TKAAREMNVG LTVLKKRCRE LGVARWPHRK MKSLKSLILN EMGSKGMSAA  360
AMRRELEALE NCCALMERNP AVELTERTKK LRQACFKENY KRRRAAAVDV LDLDHCFSFA  420
AGHCHHHHHQ QLALPPPPAA AADHRRRDFF GY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039330.0AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06.
GenBankAP0042580.0AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638205.10.0uncharacterized protein LOC107276829
TrEMBLA0A0E0FN290.0A0A0E0FN29_ORYNI; Uncharacterized protein
STRINGONIVA01G21910.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128882330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.15e-31RWP-RK domain-containing protein