PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G19770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 177aa MW: 18405 Da PI: 8.3327 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.7 | 1.5e-06 | 34 | 75 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR+ + ++eL llP++ ++ s i+e+A+ ++ +L ONIVA01G19770.1 34 ERARRQTMSRLYDELGALLPNL----PPRASTTRIVEEAIACVGEL 75 9********************6....389**********9887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.855 | 25 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.84E-8 | 30 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.84E-5 | 33 | 77 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-6 | 33 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.9E-4 | 121 | 172 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MAEEDNLALS VVCERSPGTA VEAASGRPPK AGSERARRQT MSRLYDELGA LLPNLPPRAS 60 TTRIVEEAIA CVGELRARTA ELEAYSAVAA AAGRAARDGP AEVVASGKTS CFAVRLRAAR 120 ARPGALTRVL EVFQRHGVAV LAATVARDGE ETAVTVTTAA VAPRVLETIK AEIICAA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004222 | 0.0 | AP004222.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1003B09. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878346.1 | 1e-118 | uncharacterized protein LOC112937659 | ||||
TrEMBL | A0A0E0FMA8 | 1e-117 | A0A0E0FMA8_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0MX92 | 1e-117 | A0A0E0MX92_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2WQQ5 | 1e-117 | A2WQQ5_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q8LQ30 | 1e-117 | Q8LQ30_ORYSJ; Uncharacterized protein B1003B09.3 | ||||
STRING | ORUFI01G19830.1 | 1e-117 | (Oryza rufipogon) | ||||
STRING | ONIVA01G19770.1 | 1e-117 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9141 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 2e-07 | bHLH family protein |