PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G19320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 331aa MW: 35162.9 Da PI: 5.1326 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.8 | 5.5e-31 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +l+ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++q+q +q ONIVA01G19320.1 4 SCNGCRVLRKGCSEGCTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAGPDHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGQWQACQ 97 6********************************************************************************************* PP DUF260 90 lkaelallk 98 +++e++l + ONIVA01G19320.1 98 AAVEAVLKG 106 ***998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.53 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-25 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSEGCT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAGPDH 60 LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GQWQACQAAV EAVLKGDPVV QVSSEAAAAA 120 QATPPLRAYD IRHVAKDAEA DAAANLLRVA RGGRTRFKRA SSSSNSKHGA KLAGAAAAKR 180 AASPSSSSPT HETEPEAVVV VDDHDDDHHH PALSHEAHEE ESAGSHDHDD DDHVDDGDNN 240 DMAIADVTPP RAGSEDTEVE TGSHVSQAEQ SPVPVEHEEG EEEEVGLELT LGFQPLVVRA 300 SRRPSSAEAR CDLSGLSAES SRIGLRLELP A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT832350 | 0.0 | CT832350.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN025N11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628244.1 | 1e-176 | LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 2e-80 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A0E0FM49 | 0.0 | A0A0E0FM49_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G19320.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-65 | LOB domain-containing protein 41 |