PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G18550.2
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 377aa    MW: 40857.4 Da    PI: 9.6714
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G18550.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.47.1e-05233276654
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++  ++R +++ +++  L++l+ +      +K + a++L +A  +I++L
  ONIVA01G18550.2 233 KATCKKRSQKLGDRITALQQLVSPY-----GKTDTASVLHEAAACIRQL 276
                      56669******************99.....9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.702227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-6233285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-9237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MLTDELERKR YRTLILMADT FLANDLRQFP SAKRKASLYT STLANIFILM LKGSTGIQLL  60
SLFSGYMKDD VSSAVETQLA ESCRLESGVE TCRLLVSSVA VKCEASNSPS TTVGFDRMIA  120
ADYDLFHHMS FSPSLQNLQS PTFFTTRSSE SYLGESSIYG GGARPALAQF SYSQPIAATS  180
AAHLVRWTAA GEPMTGDGGF RSSKRLKTAT TATTQPPRHG VKCHAKPRNQ TTKATCKKRS  240
QKLGDRITAL QQLVSPYGKT DTASVLHEAA ACIRQLHQQI QILTAPYPGT SSSSASSQQQ  300
VVFSVLESCS HVMSFFTAIA TVLWLQDAGG GGGTATELRR RGLCVAALSP AVVSLAAEGG  360
RRRTDVEDQK RIWFSNQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0839421e-163AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence.
GenBankAC1370691e-163AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.
GenBankAP0149591e-163AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-163CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630126.11e-160transcription factor bHLH110 isoform X1
RefseqXP_015630127.11e-160transcription factor bHLH110 isoform X1
TrEMBLA0A0E0FLU90.0A0A0E0FLU9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NTD40.0A0A0E0NTD4_ORYRU; Uncharacterized protein
STRINGORUFI03G13300.10.0(Oryza rufipogon)
STRINGONIVA01G18550.20.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37582426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.14e-17bHLH family protein