PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G18550.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 352aa MW: 38059.1 Da PI: 9.8983

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G18550.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.4e-05	233	276	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ ++R +++ +++ L++l+ + +K + a++L +A +I++L ONIVA01G18550.1 233 KATCKKRSQKLGDRITALQQLVSPY-----GKTDTASVLHEAAACIRQL 276 56669****************99.....9***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.702	227	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-6	233	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-9	237	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MLTDELERKR YRTLILMADT FLANDLRQFP SAKRKASLYT STLANIFILM LKGSTGIQLL 60 SLFSGYMKDD VSSAVETQLA ESCRLESGVE TCRLLVSSVA VKCEASNSPS TTVGFDRMIA 120 ADYDLFHHMS FSPSLQNLQS PTFFTTRSSE SYLGESSIYG GGARPALAQF SYSQPIAATS 180 AAHLVRWTAA GEPMTGDGGF RSSKRLKTAT TATTQPPRHG VKCHAKPRNQ TTKATCKKRS 240 QKLGDRITAL QQLVSPYGKT DTASVLHEAA ACIRQLHQQI QILTAPYPGT SSSSASSQQQ 300 VDAGGGGGTA TELRRRGLCV AALSPAVVSL AAEGGRRRTD VEDQKRIWFS NQ

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MLTDELERKR YRTLILMADT FLANDLRQFP SAKRKASLYT STLANIFILM LKGSTGIQLL  60
SLFSGYMKDD VSSAVETQLA ESCRLESGVE TCRLLVSSVA VKCEASNSPS TTVGFDRMIA  120
ADYDLFHHMS FSPSLQNLQS PTFFTTRSSE SYLGESSIYG GGARPALAQF SYSQPIAATS  180
AAHLVRWTAA GEPMTGDGGF RSSKRLKTAT TATTQPPRHG VKCHAKPRNQ TTKATCKKRS  240
QKLGDRITAL QQLVSPYGKT DTASVLHEAA ACIRQLHQQI QILTAPYPGT SSSSASSQQQ  300
VDAGGGGGTA TELRRRGLCV AALSPAVVSL AAEGGRRRTD VEDQKRIWFS NQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC083942	8e-81	AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence.
GenBank	AC137069	8e-81	AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.
GenBank	AP014959	8e-81	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	8e-81	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630126.1	1e-164	transcription factor bHLH110 isoform X1
Refseq	XP_015630127.1	1e-164	transcription factor bHLH110 isoform X1
TrEMBL	A0A0E0FLU8	0.0	A0A0E0FLU8_ORYNI; Uncharacterized protein
STRING	ORUFI03G13300.1	0.0	(Oryza rufipogon)
STRING	ONIVA01G18550.2	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-17	bHLH family protein