PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G18160.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 248aa    MW: 27268.4 Da    PI: 8.0614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G18160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM317.1e-10592033128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev..ikev.diykvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknra.......tksg 81 
                       Gf+  Pt +elv ++L+++++g ++   +v  i    d   + P dL +    +++ + + e ++F++r++  + + r++ a        + g
  ONIVA01G18160.1  59 TGFQDTPTVDELVLRHLRPRLRGFHCADGDVpvIGVRdDPAAAAPLDLVArhggAADRR-RgEAFYFVRRRRCRRPNVRRTVAeggggggGAGG 151
                      69999*******************9766565424444699********74334322223.2588999999887765555544456666655589 PP

              NAM  82 yWka..tgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                       Wk+  tg+ k+v++ +  + + k+   fy   +g + ++    Wv+ ey++
  ONIVA01G18160.1 152 LWKQswTGSGKSVTDLGVVVPWSKTCYCFYrrdEGGRLSTFGGGWVLAEYEI 203
                      9**54499*******888888999999***43333444445679******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.63457230IPR003441NAC domain
SuperFamilySSF1019412.22E-2458229IPR003441NAC domain
PfamPF023658.5E-859203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAISAAAADH SRASPSSAAT QPTTICWRPS KVKEEVEEDG MVVDPPDGAG EASDNLRATG  60
FQDTPTVDEL VLRHLRPRLR GFHCADGDVP VIGVRDDPAA AAPLDLVARH GGAADRRRGE  120
AFYFVRRRRC RRPNVRRTVA EGGGGGGGAG GLWKQSWTGS GKSVTDLGVV VPWSKTCYCF  180
YRRDEGGRLS TFGGGWVLAE YEITEPGTYR RADEEEDDDD YWVLCHVRKT ASNKRKRNRC  240
ERPWLHGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029680.0AP002968.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0416G11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637825.11e-142uncharacterized protein LOC107275546
TrEMBLA0A0E0FLP51e-180A0A0E0FLP5_ORYNI; Uncharacterized protein
STRINGONIVA01G18160.11e-180(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173721010