PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G16280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 391aa MW: 44160.8 Da PI: 9.3932 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 27.3 | 7.8e-09 | 125 | 187 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqL..GGsekAtPktilelmkv.......kgLtlehvkSHLQkYRl 55 k+r WtpeL + F+e e+L G++ +P +ilelmk+ + Lt++ v S LQkY+ ONIVA01G16280.1 125 KKRFIWTPELSKIFIEIYEELllTGIN-PVPTKILELMKLrigpmndPELTRNTVSSYLQKYKA 187 6899**************985336776.8********976333333368*************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-12 | 122 | 190 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.2E-6 | 123 | 188 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MVVVGDEAVQ RAVVLRLGVN FRATVCSEIN AAVEMLRERT KEFDFAVISE ESIRSLRPEI 60 MKFLGEETGL RLLVSCPSSG DQTRNCSTAA AAAAAAVASS VRRATNGRKH RRRAGEKSSQ 120 HRQRKKRFIW TPELSKIFIE IYEELLLTGI NPVPTKILEL MKLRIGPMND PELTRNTVSS 180 YLQKYKAYLL KQEQKDQQLP IDDNTNTSSI KSQQGSASLQ QQIMNYGEND SMDNQSIILS 240 QTRYNEHSNK QPKLLTANYH GPRNMHHHHK NTNMQPSNVL RPPNLINAKG FNMSFNKEEI 300 NEAIYQSQLT TRRVSATHAI AKAQASWRVT MTKDMHPISQ LHQQDDETTP DDSSNNTNSI 360 YEKYGEGVSS NNTFGLVLAI ELRTTTTDIE L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 126 | RRRAGEKSSQHRQRKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002953 | 0.0 | AP002953.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0426D06. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644297.1 | 3e-82 | uncharacterized protein LOC107277009 | ||||
TrEMBL | A0A0E0FL25 | 0.0 | A0A0E0FL25_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G16280.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13782 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59570.1 | 8e-09 | G2-like family protein |