PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G16280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 391aa    MW: 44160.8 Da    PI: 9.3932
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G16280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like27.37.8e-09125187155
          G2-like   1 kprlrWtpeLHerFveaveqL..GGsekAtPktilelmkv.......kgLtlehvkSHLQkYRl 55 
                      k+r  WtpeL + F+e  e+L   G++  +P +ilelmk+       + Lt++ v S LQkY+ 
  ONIVA01G16280.1 125 KKRFIWTPELSKIFIEIYEELllTGIN-PVPTKILELMKLrigpmndPELTRNTVSSYLQKYKA 187
                      6899**************985336776.8********976333333368*************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-12122190IPR009057Homeodomain-like
SuperFamilySSF466895.2E-6123188IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MVVVGDEAVQ RAVVLRLGVN FRATVCSEIN AAVEMLRERT KEFDFAVISE ESIRSLRPEI  60
MKFLGEETGL RLLVSCPSSG DQTRNCSTAA AAAAAAVASS VRRATNGRKH RRRAGEKSSQ  120
HRQRKKRFIW TPELSKIFIE IYEELLLTGI NPVPTKILEL MKLRIGPMND PELTRNTVSS  180
YLQKYKAYLL KQEQKDQQLP IDDNTNTSSI KSQQGSASLQ QQIMNYGEND SMDNQSIILS  240
QTRYNEHSNK QPKLLTANYH GPRNMHHHHK NTNMQPSNVL RPPNLINAKG FNMSFNKEEI  300
NEAIYQSQLT TRRVSATHAI AKAQASWRVT MTKDMHPISQ LHQQDDETTP DDSSNNTNSI  360
YEKYGEGVSS NNTFGLVLAI ELRTTTTDIE L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110126RRRAGEKSSQHRQRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0029530.0AP002953.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0426D06.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644297.13e-82uncharacterized protein LOC107277009
TrEMBLA0A0E0FL250.0A0A0E0FL25_ORYNI; Uncharacterized protein
STRINGONIVA01G16280.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1378244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.18e-09G2-like family protein