PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G15460.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 414aa    MW: 46339.9 Da    PI: 8.8969
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G15460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like30.21e-0989147155
          G2-like   1 kprlrWtpeLHerFveav.eqLGGsekAtPktil...elmkvkgLtlehvkSHLQkYRl 55 
                      kpr +Wt +  ++F ea  e+L  s k +P ++l   + m+  gLtl+++ S LQkYRl
  ONIVA01G15460.1  89 KPRFVWTLQQNAKFSEAYkEELSRSGKVVPTKLLkrlKSMNETGLTLQNISSRLQKYRL 147
                      79***************8357*********999722257999****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.58E-786151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-1287151IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MPSCNNDHQI NPAAARTEEE HGHFSPSTML PAASLHGDSN GSTTTASSSS GNRATNRRNQ  60
CWETTAKQVS TVQGEAAQEQ PAAQNQPRKP RFVWTLQQNA KFSEAYKEEL SRSGKVVPTK  120
LLKRLKSMNE TGLTLQNISS RLQKYRLSLK RQTSHVDQST STDSTTASSI QTKQTPALLQ  180
QIIHPRALHT QLAPDVHQVI TTNLPQQHIQ HYQPNQILSQ LYNMHHQQVE RLSEPHSNEP  240
IYKEYNNLAQ RFTQVNYHGH SSIHDHHYAN IIKKLLPPNV MQPCDLINAL PQQPAAATAC  300
CMQSNTQTVS SALLVKGMQN HPPDHHIQAF GVLDMGTAQY MGQQLNMYTA EGNWRGTTPQ  360
NMHPISQVHR HVSEPPPSYF SNNAKANGRS QEDLDVVLQQ KLVINDSLVI IIPF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0072040.0AP007204.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0008D05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0FKS80.0A0A0E0FKS8_ORYNI; Uncharacterized protein
STRINGONIVA01G15460.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1985788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-06response regulator 2