PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G14320.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 604aa    MW: 62097.5 Da    PI: 7.6266
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G14320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30317375259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++v+++tYeg+Hnh+
  ONIVA01G14320.1 317 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQVQRCAEDKTVLITTYEGNHNHQ 375
                      7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-33301377IPR003657WRKY domain
SuperFamilySSF1182902.09E-27309377IPR003657WRKY domain
PROSITE profilePS5081129.31311377IPR003657WRKY domain
SMARTSM007746.8E-36316376IPR003657WRKY domain
PfamPF031065.3E-26318375IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MELRPPPPKH HHHRRRRGGG GEDGGEEEEE EAGRLSLRGG GFWRRHDGEE EEEKGGGRRG  60
EIKEVDFFLG ASGRDVVVAS RRHDDGFRGT THGGGGGGDV NIGLDLLTTT TAGAAAGGAA  120
AGAGEEDTGK NHRKEATTAA VDVELRRVVE ENRRLRGMLD ELTRSYSALY HQYLQVTQQQ  180
NHRHPDHHLI MNNNNNRPSL AQTHRTAATT TATTQQFLEP RASSTAQATA DADMAASDDE  240
AGRGGGDGDA SSPSLSNAAA GGGGGGNKMR RVGGQDETAA AAPARENGEQ QAAAAAELPC  300
RKPRVSVRAR SEAPMISDGC QWRKYGQKMA KGNPCPRAYY RCTMAIGCPV RKQVQRCAED  360
KTVLITTYEG NHNHQLPPAA TTMANTTSAA AAMLLSGPAA SRDGAAAALL GHHHHHHPAA  420
MFHQSFPYAS TMATLSASAP FPTITLDLTQ TPAGGAGAAS LLHALHRPPV IHPGAAAQAM  480
PFAVPPQLAM YLPQQRAAAA GLGGAGAARQ PSVMETVTAA LAADPNFTTA LAAAISSVVA  540
GGAHHQALST TPRGSAAGAG DGNGNGSSAA AVATGAASPA ATAEAPAASG SPPRLATQSC  600
TTSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-22307377877Probable WRKY transcription factor 4
2lex_A2e-22307377877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0024800.0AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880603.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLA0A0E0FKC70.0A0A0E0FKC7_ORYNI; Uncharacterized protein
STRINGONIVA01G14320.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-54WRKY family protein