PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA01G14150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 695aa MW: 74503.9 Da PI: 8.8456 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.3 | 9e-16 | 530 | 576 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq ONIVA01G14150.1 530 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 576 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.38E-17 | 523 | 580 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-20 | 524 | 585 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.981 | 526 | 575 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-20 | 530 | 584 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-13 | 530 | 576 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-17 | 532 | 581 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MTVEWWTQIH ARTDGLTHAL THTYRGLTRG RCREPGAWGC GCNRCVALRP PTPQPLIPHA 60 DQQRRPARPP LHLRLRLRLR FLFSSSLPPS SERKRELTSR CPAGRGGEHG FAFGWSSRLC 120 TRSTAANSSF LDFFTLSPRT AQMSDGNDFA ELLWENGQAV VHGRKKHPQP AFPPFGFFGG 180 TGGGGGGSSS RAQERQPGGI DAFAKVGGGF GALGMAPAVH DFASGFGATT QDNGDDDTVP 240 WIHYPIIDDE DAAAPAALAA ADYGSDFFSE LQAAAAAAAA AAPPTDLASL PASNHNGATN 300 NRNAPVATTT TREPSKESHG GLSVPTTRAE PQPQPQLAAA KLPRSSGSGG REGVMNFSLF 360 SRPAVLARAT LESAQRTQGT DNKASNVTAS NRVESTVVQT ASGPRSAPAF ADQRAAAWPP 420 QPKEMPFAST AAAPMAPAVN LHHEMGRDRA GRTMRVHKTE ARKAPEATVA TSSVCSGNGA 480 GSDELWRQQK RKCQAQAECS ASQDDDLDDE PGVLRKSGTR STKRSRTAEV HNLSERRRRD 540 RINEKMRALQ ELIPNCNKID KASMLDEAIE YLKTLQLQVQ MMSMGTGLCI PPMLLPTAMQ 600 HLQIPPMAHF PHLGMGLGYG MGVFDMSNTG ALQMPPMPGA HFPCPMIPGA MANMVQDQQQ 660 GIANQQQQCL NKEAIQGANP GDSQMQIIMQ VLIKN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 534 | 539 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102252 | 0.0 | AK102252.1 Oryza sativa Japonica Group cDNA clone:J033088H11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619034.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X2 | ||||
Swissprot | Q0JNI9 | 0.0 | PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 | ||||
TrEMBL | A0A0E0FKA1 | 0.0 | A0A0E0FKA1_ORYNI; Uncharacterized protein | ||||
STRING | OS01T0286100-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 5e-34 | phytochrome interacting factor 3 |
Publications ? help Back to Top | |||
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