PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G14150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 695aa    MW: 74503.9 Da    PI: 8.8456
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G14150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.39e-16530576455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  ONIVA01G14150.1 530 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 576
                      5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.38E-17523580No hitNo description
SuperFamilySSF474592.22E-20524585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981526575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-20530584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-13530576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17532581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MTVEWWTQIH ARTDGLTHAL THTYRGLTRG RCREPGAWGC GCNRCVALRP PTPQPLIPHA  60
DQQRRPARPP LHLRLRLRLR FLFSSSLPPS SERKRELTSR CPAGRGGEHG FAFGWSSRLC  120
TRSTAANSSF LDFFTLSPRT AQMSDGNDFA ELLWENGQAV VHGRKKHPQP AFPPFGFFGG  180
TGGGGGGSSS RAQERQPGGI DAFAKVGGGF GALGMAPAVH DFASGFGATT QDNGDDDTVP  240
WIHYPIIDDE DAAAPAALAA ADYGSDFFSE LQAAAAAAAA AAPPTDLASL PASNHNGATN  300
NRNAPVATTT TREPSKESHG GLSVPTTRAE PQPQPQLAAA KLPRSSGSGG REGVMNFSLF  360
SRPAVLARAT LESAQRTQGT DNKASNVTAS NRVESTVVQT ASGPRSAPAF ADQRAAAWPP  420
QPKEMPFAST AAAPMAPAVN LHHEMGRDRA GRTMRVHKTE ARKAPEATVA TSSVCSGNGA  480
GSDELWRQQK RKCQAQAECS ASQDDDLDDE PGVLRKSGTR STKRSRTAEV HNLSERRRRD  540
RINEKMRALQ ELIPNCNKID KASMLDEAIE YLKTLQLQVQ MMSMGTGLCI PPMLLPTAMQ  600
HLQIPPMAHF PHLGMGLGYG MGVFDMSNTG ALQMPPMPGA HFPCPMIPGA MANMVQDQQQ  660
GIANQQQQCL NKEAIQGANP GDSQMQIIMQ VLIKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1534539ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022520.0AK102252.1 Oryza sativa Japonica Group cDNA clone:J033088H11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619034.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X2
SwissprotQ0JNI90.0PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A0E0FKA10.0A0A0E0FKA1_ORYNI; Uncharacterized protein
STRINGOS01T0286100-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-34phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]