PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G12440.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 468aa    MW: 49203.2 Da    PI: 7.9939
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G12440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-105480127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C +++rtG C yG++C+++H++
  ONIVA01G12440.1 54 PGEADCVYYLRTGACGYGENCRYNHPR 80
                     57899********************96 PP
2zf-CCCH37.34.7e-12104130127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C +++++GtCk+G++Ck+ H++
  ONIVA01G12440.1 104 PGQPVCEYYMKNGTCKFGSNCKYDHPR 130
                      5789*********************96 PP
3zf-CCCH33.47.6e-11149174227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C ++ +tG+Ck+G++CkF+H++
  ONIVA01G12440.1 149 GEKDCTYYVKTGHCKFGSTCKFHHPE 174
                      5789********************96 PP
4zf-CCCH37.34.6e-12302328127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+++++tG Ck+G+ Ck++H++
  ONIVA01G12440.1 302 PGQPECQYYLKTGSCKFGSACKYHHPQ 328
                      5789*********************97 PP
5zf-CCCH28.62.4e-09350374327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +C ++ + G+Ck+G++CkF H++
  ONIVA01G12440.1 350 SQPCAYYTQHGFCKFGPTCKFDHPM 374
                      679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-65380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2115381IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-75580IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-65782IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-45980IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7103130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765103131IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9105130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6106131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5108131IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5147174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502147175IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8149174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6150173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4153173IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-6301328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413301329IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5305328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-4307327IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5347374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69347375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6349377IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-7349374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5351372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEPYAAAEGG GGGGGGGGGS TDTGLEESMW RMGLGGGGGG GGEAVAAGRL PERPGEADCV  60
YYLRTGACGY GENCRYNHPR DRAAAAVLNG GGKTTHSAEY PERPGQPVCE YYMKNGTCKF  120
GSNCKYDHPR EGSVQAVMLN SSGYPLRSGE KDCTYYVKTG HCKFGSTCKF HHPEIGGVSE  180
TPNMYPPVQP QPISSSHPYQ HLAGWQMGRP PVLPGSFLSG SYPPMMLPST VVPMQGWNPY  240
ISPVNQVASA GGHQTVQAGP FYGLSHQGPS AAVTYGSQYA PLSSSTMPSS SSKQEPAFPA  300
RPGQPECQYY LKTGSCKFGS ACKYHHPQYL NTPKSNCMLS PLGLPLRPGS QPCAYYTQHG  360
FCKFGPTCKF DHPMGTLSYS PSASSITDLP IAPYPLNYAV APVAPPSSSS DLRPEYLLTK  420
EFSANQSASP GTTCGPAGAM LKAYAPHMLI RPQTSGAGGM VTTHGGEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0739200.0AK073920.1 Oryza sativa Japonica Group cDNA clone:J033073E09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622429.10.0zinc finger CCCH domain-containing protein 5
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A0E0FJL40.0A0A0E0FJL4_ORYNI; Uncharacterized protein
TrEMBLI1NM100.0I1NM10_ORYGL; Uncharacterized protein
STRINGONIVA01G12440.10.0(Oryza nivara)
STRINGORGLA01G0090000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-115C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]