PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G11590.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 249aa    MW: 26077.3 Da    PI: 9.8748
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G11590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.24.9e-32111111100
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka  +e  r++a+++l++eA++r rdP +G+++ ++ l+++ + l+ae
  ONIVA01G11590.1  11 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRRDNAALRAE 104
                      7**********************************************9977766**************************************** PP

           DUF260  94 lallkee 100
                       a+l+++
  ONIVA01G11590.1 105 NAALRRQ 111
                      9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.42110112IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-2811108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTGGGSGGAG ACAVCKHQRR KCEPNCELAA YFPANRMNDF RALHLVFGVA NLTKLIKANA  60
TEAARRRAAE TLTWEARWRE RDPSEGCYRE VSCLRRDNAA LRAENAALRR QADQCACCAG  120
AAGVRHASSP TTLQHQLLLV SAYNGATAAR PGNVVPHNAT VVPGGFVAAA GGVRGANGNG  180
AMSSVRPPPH HVQAPATQTV TGFVAHAQDD RYRAVSVCPP AANAAAVPRS GAAVRGQGDY  240
RDKISDAAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-1681177116LOB family transfactor Ramosa2.1
5ly0_B1e-1681177116LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032010.0AP003201.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1066G12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644107.11e-180protein ASYMMETRIC LEAVES 2
TrEMBLA0A0D9Y5X71e-179A0A0D9Y5X7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FJB71e-179A0A0E0FJB7_ORYNI; Uncharacterized protein
TrEMBLB8A9M41e-179B8A9M4_ORYSI; Uncharacterized protein
STRINGOGLUM01G10300.11e-180(Oryza glumipatula)
STRINGONIVA01G11590.11e-180(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-13LOB domain-containing protein 2