PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G09540.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 267aa    MW: 27211.8 Da    PI: 8.9519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G09540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.5e-1380126354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN  +++Lr+++P        K++Ka+ L ++v ++k+L
  ONIVA01G09540.1  80 KSHSEAERRRRERINAHLATLRTMVPCT-----DKMDKAALLAEVVGHVKKL 126
                      58*************************7.....6**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.18677126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1080126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1481128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-1381131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1183132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.3E-6166234No hitNo description
CDDcd048733.79E-5167233No hitNo description
SuperFamilySSF550214.3E-6167234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGSAPFGDAV AGGGLYEYQG YHGGFAGGHG LGQPAGRAPA LDDGETEGMD ASAAAAVAAM  60
EMAKRNCGGG REEKAAMALK SHSEAERRRR ERINAHLATL RTMVPCTDKM DKAALLAEVV  120
GHVKKLKSAA ARVGRRAAVP SGADEVAVDE ASATGGGGEG PLLLRATLSC DDRADLFVDV  180
KRALQPLGLE VVGSEVTTLG GRVRLAFLVS CGSRGGAAAA AMASVRHALQ SVLDKASSGF  240
DFAPRAASLL GSKRRKVSTF ESSSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685930.0AK068593.1 Oryza sativa Japonica Group cDNA clone:J013152L23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879685.10.0transcription factor bHLH30
TrEMBLA0A0E0FII30.0A0A0E0FII3_ORYNI; Uncharacterized protein
STRINGONIVA01G09540.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-27bHLH family protein