PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G09240.1
Organism
Oryza nivara
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 604aa    MW: 65560.7 Da    PI: 4.3678
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G09240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.73e-131349339
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                     +++++ r +tf kRrng++K A+ LS+L++a vav+i
  ONIVA01G09240.1 13 VDDERERDITFFKRRNGLFKCASDLSILTGASVAVVI 49
                     578999*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.6E-8163IPR002100Transcription factor, MADS-box
CDDcd002661.39E-19686No hitNo description
SuperFamilySSF554551.44E-13772IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.541349IPR002100Transcription factor, MADS-box
PfamPF003195.9E-151453IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MPRRARRTGA AYVDDERERD ITFFKRRNGL FKCASDLSIL TGASVAVVIE DQNRSKFHAV  60
GTPTVQAVVD AALSSDVEEA AAEARPVADE QLMERIAPLE RELAWLKGEA AEKDETTKAS  120
KARFKMAQKK EENEEEGDTK KKKLFFSKPD KLSSDEMNEL LAEMLEIKKE LNVRLPPLRR  180
RGGKRPIQGS SVPPPPPPPP PPPQPEQQLQ LPQWPNLSGP HNQLLPVAPP PFVADQPPPP  240
PPPAAGGSLW IPELPPPPVE GSPWAGLLPL RPPRFAGMEP SFLESQQAPP PAQVSTQLAP  300
LPLIREEAPL LQEPFLFADQ APVLAPLPAP LQMPVAETHL PLQAPLLQEP FLFSDHAPTL  360
APLPSPLQMP VAETHLPLQV QAPFMQEPFL FSDQAPVLAP PPTPLQMPVE AHMPLEAPWI  420
QEPFLMPDQA PVHAPPPTPL LMPVGADHFP LEAPLFQESL IMADQKSVHA LPPPPLQMPL  480
EAHLPPAAQE YNQDLAVQQQ PQEYENYDYM FENVGLSQAQ PVAAGAGDAG FAAIGNDDNP  540
FGYQQLVASP LYDGQIYFGS GVDNMGVPPA GDFGGVPEAA LPEVEHASSS GWGNNITGDA  600
GAWF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031040.0AP003104.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0038J17.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636878.10.0pollen-specific leucine-rich repeat extensin-like protein 2
TrEMBLA0A0E0FIE80.0A0A0E0FIE8_ORYNI; Uncharacterized protein
TrEMBLA0A0E0MT140.0A0A0E0MT14_ORYRU; Uncharacterized protein
TrEMBLA2WM110.0A2WM11_ORYSI; Uncharacterized protein
STRINGORUFI01G07750.10.0(Oryza rufipogon)
STRINGONIVA01G09240.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP155501117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-08AGAMOUS-like 62